1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gatcaggtttttgtacctgctattgtgtttggtttataattaggtgtgatgagtctgatatgtaattatatttctttactaattattcaatcagttgcagAGTCACGCGGGCCTCTTCAACCTCTGTATAGTAGTCCTTGTTGCTGTGAATAGCCGACTCATCATTGAGAATTTAATGAAG
species | Glycine max |
transcript | GLYMA13G16560.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAG TEST: gi|298164030|gb|HO013675.1|HO013675
genomic: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAGgttctcgccg ... tcagttgcag-
EST: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAG TEST: gi|298164030|gb|HO013675.1|HO013675
genomic: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAGgttctcgccg ... tcagttgcag-
EST: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAG TEST: gi|298164030|gb|HO013675.1|HO013675
genomic: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAGgttctcgccg ... tcagttgcag-
EST: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAG TEST: gi|298164030|gb|HO013675.1|HO013675
genomic: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAGgttctcgccg ... tcagttgcag-
EST: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAG TEST: gi|18041405|gb|BM309699.1|BM309699
genomic: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAGgttctcgccg ... tcagttgcag-
EST: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAG AGTCACGCGGGCCTCTTCAACCTCTGTATAGTAGTCCTTGTTGCTGTGAATEST: gi|26047138|gb|CA784021.1|CA784021
genomic: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAGgttctcgccg ... tcagttgcagAGTCACGCGGGCCTCTTCAACCTCTGTATAGTAGTCCTTGTTGCTGTGAAT
EST: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAG AGTCACGCGGGCCTCTTCAACCTCTGTATAGTAGTCCTTGTTGCTGTGAAT
genomic: ATCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACCATTTTCCGTCAGgttctcgccg ... tcagttgcagAGTCACGCGGGCCTCTTCAACCTCTGTATAGTAGTCCTTGTTGCTGTGAAT
gtgatgagtctgatatgtaattatatttctttactaattattcaatcagttgcagAGTCACGCGGGCCTCTTCAACCTCTGTATAGTAGTCCTTGTTGCTGTGAATAGCCGACTCATCATTGAGAATTTAATGAAG
tactaat putative branch site (score: 1)
tgatatgtaattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcaggtttttgtacctgctattgtgtttggtttataattaggtgtgatgagtctgatatgtaattatatttctttactaattattcaatcagttgcagAGTCACGCGGGCCTCTTCAACCTCTGTATAGTAGTCCTTGTTGCTGTGAATAGCCGACTCATCATTGAGAATTTAATGAAG
- - - - - - -tacctgc
- - - - - - - - - - - - gtgtttg
- - - - - - - - - - - - - - - - - - - - -aggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - gagtctg