1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aagtagcctttgcagcttctatctccattctccccatgcctttatttttcctttccttttgttttaatcagtgaggttacttttttttttcctcattcagTCAAGGGACACGTATTTCTTGAAAAAGCTCCTGAATCTGAAAGGAGATGATGGTTTCAGAATGAATGAAGTGCTAGTATCATTGTGGTATTTAATGGGCT
species | Glycine max |
transcript | GLYMA13G11710.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGCTGCGCTAATGTACTATGTTTTCTTTCTCACCCCAAACCAGACCCCG TCAAGGGACACGTATTTCTTGAAAAAGCTCCTGAATCTGAAAGGAGATGATEST: gi|20812781|gb|BQ297259.1|BQ297259
genomic: GGGCTGCGCTAATGTACTATGTTTTCTTTCTCACCCCAAACCAGACCCCGgtatgtccct ... cctcattcagTCAAGGGACACGTATTTCTTGAAAAAGCTCCTGAATCTGAAAGGAGATGAT
EST: GGGCTGCGCTAATGTACTATGTTTTCTTTCTCACCCCAAACCAGACCCCG TCAAGGGACACGTATTTCTTGAAAAAGCTCCTGAATCTGAAAGGAGATGATEST: gi|7691208|gb|AW759339.1|AW759339
genomic: GGGCTGCGCTAATGTACTATGTTTTCTTTCTCACCCCAAACCAGACCCCGgtatgtccct ... cctcattcagTCAAGGGACACGTATTTCTTGAAAAAGCTCCTGAATCTGAAAGGAGATGAT
EST: GGGCTGCGCTAATGTACTATGTTNTCTTTCTCACCCCAAACCAGACCCCG TCAAGGGACACGTATTTCTTEST: gi|7691864|gb|AW759983.1|AW759983
genomic: GGGCTGCGCTAATGTACTATGTTTTCTTTCTCACCCCAAACCAGACCCCGgtatgtccct ... cctcattcagTCAAGGGACACGTATTTCTT
EST: GGGCTGCGCTAATGTACTATGTTTTCTTTCTCACCCCANACCAGACCCCG TCAAGGGACACGTATTTCTTGAAAAAGCTCCTGAATCTGAAAGGAGATGAT
genomic: GGGCTGCGCTAATGTACTATGTTTTCTTTCTCACCCCAAACCAGACCCCGgtatgtccct ... cctcattcagTCAAGGGACACGTATTTCTTGAAAAAGCTCCTGAATCTGAAAGGAGATGAT
ttttcctttccttttgttttaatcagtgaggttacttttttttttcctcattcagTCAAGGGACACGTATTTCTTGAAAAAGCTCCTGAATCTGAAAGGAGATGATGGTTTCAGAATGAATGAAGTGCTAGTATCATTGTGGTATTTAATGGGCT
ttttaat putative branch site (score: 3)
ttacttttttttttcc putative PPT
ttactttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtagcctttgcagcttctatctccattctccccatgcctttatttttcctttccttttgttttaatcagtgaggttacttttttttttcctcattcagTCAAGGGACACGTATTTCTTGAAAAAGCTCCTGAATCTGAAAGGAGATGATGGTTTCAGAATGAATGAAGTGCTAGTATCATTGTGGTATTTAATGGGCT
- - - cctttgc
- - - - - - - gcttcta
- - - - - - - - - - - ctccatt
- - - - - - - - - - - - - - -ctcccca