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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctccatttcccccttcaccctttcctcgtttacttaaacggcgatttgatgatgtcgttttttttttgtgtccagCGATTTCGCGGAGATTCTGGACGCGTACGAGAGGGGCGACAAGTTCTACTTGTACACCGGACGCGGACCTTCCTCCGAAGCGTTGCATTTGGGACACTTG

Basic information

species Glycine max
transcript GLYMA13G11390.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G11390.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G04600.2 (Arabidopsis thaliana), 3'ss of exon 2
gtacctccatttcccccttcaccctttcctcgtttacttaaacggcgatttgatgatgtcgttttttttttgtgtccagCGATTTCGCGGAGATTCTGGACGCGTACGAGAGGGGCGACAAGTTCTACTTGTACACCGGACGCGGACCTTCCTCCGAAGCGTTGCATTTGGGACACTTG
     |        | ||       ||  | || ||   |     ||  ||| |  | |   || |    | |   ||| ||||||   |||||| ||||||| || ||||| || |||||||||||  | ||||| ||| | |||||||| || ||||| ||||||||||| || |||
----gttagacattcactgttttaattaattgtgtagaaatttctcgtcttgcttgttttaattgtgaggttttaacagGGATTTCAATGAGATTTTGGACGCTTATGAGAGAGGAGACAAGTTCTATCTCTACACTGGAAGAGGACCTTCATCAGAAGCATTGCATTTGGGGCATTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcctcgtttacttaaacggcgatttgatgatgtcgttttttttttgtgtccagCGATTTCGCGGAGATTCTGGACGCGTACGAGAGGGGCGACAAGTTCTACTTGTACACCGGACGCGGACCTTCCTCCGAAGCGTTGCATTTGGGACACTTG
                       atttgat  putative branch site (score: 5)
                                     ttttttttttgtgtcc  putative PPT
                                     ttttttttttgtgt  TA-rich tract