1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcttcctattgagcagttaattatgcgtaaggctctttagttatatataaaaggaagggactgggattttttataagttgttgtgtgttggttaattcagAAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGGGCGGGCAAGTCCTGCCCAACCCCAACACCCATCATTGTGTAGTGGAAGAGCCGC
species | Glycine max |
transcript | GLYMA13G10340.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCAACTCATCACCTCTTTTTCTCCTCTCTTCGCATAGTTCAACTTGAG AAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGGGCGGGEST: gi|120531848|gb|EH259981.1|EH259981
genomic: GAGCAACTCATCACCTCTTTTTCTCCTCTCTTCGCATAGTTCAACTTGAGgtaaggtttt ... gttaattcagAAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGGGCGGG
EST: GAGCAACTCATCACCTCTTTTTCTCCTCTCTTCGCATAGTTCAACTTGAG AAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGGGCGGGEST: gi|120529749|gb|EH257883.1|EH257883
genomic: GAGCAACTCATCACCTCTTTTTCTCCTCTCTTCGCATAGTTCAACTTGAGgtaaggtttt ... gttaattcagAAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGGGCGGG
EST: GAGCAACTCATCACCTCTTTTTCTCCTCTCTTCGCATAGTTCAACTTGAG AAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGGGCGGGEST: gi|193332591|gb|FK301653.1|FK301653
genomic: GAGCAACTCATCACCTCTTTTTCTCCTCTCTTCGCATAGTTCAACTTGAGgtaaggtttt ... gttaattcagAAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGGGCGGG
EST: GAGCAACTCATCACCTCTTTTTCTCCTCTCTTCGCATAGTTCAACTTGAG AAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGGGCGGGEST: gi|26057617|gb|CA800531.1|CA800531
genomic: GAGCAACTCATCACCTCTTTTTCTCCTCTCTTCGCATAGTTCAACTTGAGgtaaggtttt ... gttaattcagAAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGGGCGGG
EST: GAGCAACTCATCACCTCTTTTTCTCCTCTCTTCGCATAGTTCAACTTGAG AAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGTGCGGG
genomic: GAGCAACTCATCACCTCTTTTTCTCCTCTCTTCGCATAGTTCAACTTGAGgtaaggtttt ... gttaattcagAAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGGGCGGG
tataaaaggaagggactgggattttttataagttgttgtgtgttggttaattcagAAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGGGCGGGCAAGTCCTGCCCAACCCCAACACCCATCATTGTGTAGTGGAAGAGCCGC
ggttaat putative branch site (score: 4)
attttttataagttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttcctattgagcagttaattatgcgtaaggctctttagttatatataaaaggaagggactgggattttttataagttgttgtgtgttggttaattcagAAATTCGGCGGTGGGAACTGATGGTGGCTCTGAGCTTCCAGGGTGGGCGGGCAAGTCCTGCCCAACCCCAACACCCATCATTGTGTAGTGGAAGAGCCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - cctattg
- - - - - - - - - - - - - - - - - - - - - - - - - - ggaaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttg