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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatatatttacatcacactccctcacccaaaattaaggatattttttgtttggtgtgtgcagTGGAATTATAAAGCTGACTCTTGAAGCTGGGAAGGCTACACCTGCTCCTCCCGTTGGCCCTGCTCTTGGTTCCAAGGGTGTCAATATTATGGCTTTCTGT

Basic information

species Glycine max
transcript GLYMA13G10300.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G10300.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S46_69V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------------------------------------------------------------------------------------------gttatatatttaca---tcacactccctcacccaaaattaa---ggatattttttgtttggtgtgtgcagTGGAATTATAAAGCTGACTCTTGAAGCTGGGAAGGCTACACCTGCTCCTCCCGTTGGCCCTGCTCTTGGTTCCAAGGGTGTCAATATTATGGCTTTCTGT
                                                                                                      |||  || ||| |    ||  || |   |     |||  |    ||||   |   |     ||       |||  || | |||||  |  | || ||||| ||||| || || || || ||||| || || ||||||||||||||||||||||| |||||||||||    
gtattcgagtgttttcttaagtgtggaagctcttttttttaatgggattgggtgtggtattctaggtcgtgaaggaattgaattcatgaatggtttctggtagttcaatttttgcggtctcgtacgctagcgtttgaaagaagttgggatgggtgcggaggaatgcagTGGTTGGTCTTGTGAAGCTCGCCTTGGAGGCTGGAAAGGCCACCCCCGCGCCACCCGTAGGTCCAGCTCTTGGTTCCAAGGGTGTCAACATTATGGCTTT----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacatcacactccctcacccaaaattaaggatattttttgtttggtgtgtgcagTGGAATTATAAAGCTGACTCTTGAAGCTGGGAAGGCTACACCTGCTCCTCCCGTTGGCCCTGCTCTTGGTTCCAAGGGTGTCAATATTATGGCTTTCTGT
            ccctcac  putative branch site (score: 3)
                     aaaattaaggatattt  TA-rich tract