1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgttatgattcattatttattatggagactatcatgaaattatttgtaagttgtactttctctcaatcatatgcattgatttttatattcatgatgcagGTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTG
species | Glycine max |
transcript | GLYMA13G09260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCG GTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAACEST: gi|163928959|gb|EH038663.1|EH038663
genomic: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCGgttagttttc ... catgatgcagGTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAAC
EST: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCG GTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAACEST: gi|298192208|gb|HO036290.1|HO036290
genomic: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCGgttagttttc ... catgatgcagGTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAAC
EST: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCG GTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAEST: gi|298187162|gb|HO034311.1|HO034311
genomic: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCGgttagttttc ... catgatgcagGTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAA
EST: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCG GTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAACEST: gi|151394671|gb|EV264542.1|EV264542
genomic: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCGgttagttttc ... catgatgcagGTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAAC
EST: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCG GTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTCGAAACEST: gi|254322261|gb|GR837675.1|GR837675
genomic: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCGgttagttttc ... catgatgcagGTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAAC
EST: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCG GTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAACEST: gi|298179524|gb|HO027995.1|HO027995
genomic: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCGgttagttttc ... catgatgcagGTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAAC
EST: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCG GTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAAC
genomic: GCTTTTGAGTTTTACCTCTGATACTTTCGAGGATCTTTCTCCCACCATCGgttagttttc ... catgatgcagGTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAAC
tgtaagttgtactttctctcaatcatatgcattgatttttatattcatgatgcagGTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTG
cattgat putative branch site (score: 4)
atatgcattgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttatgattcattatttattatggagactatcatgaaattatttgtaagttgtactttctctcaatcatatgcattgatttttatattcatgatgcagGTGTAGATTTCAAAGTTAAATATGTTACAATGGGAGGGAAAAAGTTGAAACTTGCTATTTGGGACACTG
-tgttatg
- - - - - - - - - - - - - - - - -catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcat