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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttatttttcttttctttctcacatgggtttctcttatcttccttcgcaatggttgcatttgaatgctattctttgtttatggttcttgcttttttttttctcaatgttttttttttttttttgtggtgcagGGAATGCTTCTGGTTTGTTCCTCTTCTTGGCCCCAAT

Basic information

species Glycine max
transcript GLYMA13G09140.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209710647|gb|BW676546.1|BW676546
EST:     TCCAACCTTCAAGATCATGGATGTTGCGCATTTCATTTTCGGGATATTTG                         GGAATGCTTCTGGTTTGTTCCTCTTCTTGGCCCCAAT
genomic: TCCAACCTTCAAGATCATGGATGTTGCGCATTTCATTTTCGGGATATTTGgttagttatt ... tgtggtgcagGGAATGCTTCTGGTTTGTTCCTCTTCTTGGCCCCAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatggttcttgcttttttttttctcaatgttttttttttttttttgtggtgcagGGAATGCTTCTGGTTTGTTCCTCTTCTTGGCCCCAAT
       tcttgctttttttttt  CT-rich tract
         ttgcttttttttttct  TA-rich tract