Sequence
atgc intronic sequence ATGC exonic sequencegtacatgatcactaagggacaagggtgttggagtgacattgctaggaatgctggccttcaaagGTGCGGCAAGAGTTGCCGGCTTCGTTGGATTAACTACTTGAGACCTGATCTCAAACGTGGTGCATTTTCACCCCAAGAGGAAGAACTCATCATTCATTTG
Basic information
species | Glycine max |
transcript | GLYMA13G07020.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G07020.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S211_139V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------------------------------------------gtacatgatcactaagggacaagggtgttggagtgacattgctaggaatgctggccttcaaagGTGCGGCAAGAGTTGCCGGCTTCGTTGGATTAACTACTTGAGACCTGATCTCAAACGTGGTGCATTTTCACCCCAAGAGGAAGAACTCATCATTCATTTG
|||| | |||||||| | | ||||| | | ||| | | || ||||||||||| || ||||| ||| |||| || ||||| |||||||||||||| ||| | ||||| || | ||| || | ||| ||| | ||
aatgaaaatggtttcgcaggaatgaagagcgaccaggttagcacactttgttttgtac-taatcactaaccaatatttgtgtttgtgaatggatgcaa------cagGTCTTCAAAGGTGTGGGAAGAGCTGCAGGCTGCGATGGATCAACTACTTGAGACCAGATTTGAAACGAGGGGTATTCTCCGCGACAGAAGAAAGTTTGAT---------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcactaagggacaagggtgttggagtgacattgctaggaatgctggccttcaaagGTGCGGCAAGAGTTGCCGGCTTCGTTGGATTAACTACTTGAGACCTGATCTCAAACGTGGTGCATTTTCACCCCAAGAGGAAGAACTCATCATTCATTTG
ccttc CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacatgatcactaagggacaagggtgttggagtgacattgctaggaatgctggccttcaaagGTGCGGCAAGAGTTGCCGGCTTCGTTGGATTAACTACTTGAGACCTGATCTCAAACGTGGTGCATTTTCACCCCAAGAGGAAGAACTCATCATTCATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC