1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtccttaagccatttttctggatgatgtatcttggcattgatgagggctatactttataataacaaatataaccattttccagtctatctcatatttcagTATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATTCAAGGGGCAGCATCTATAACTTCAGCAGCATCACTCGATAATTCTCTAT
species | Glycine max |
transcript | GLYMA13G06840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATAGGAACTGTGTGTGTCTCAGTTGCTTGATACAGAACCTTTTGATTGTG TATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATTEST: gi|298199132|gb|HO042495.1|HO042495
genomic: ATAGGAACTGTGTGTGTCTCAGTTGCTTGATACAGAACCTTTTGATTGTGgtatgttcct ... catatttcagTATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATT
EST: ATAGGAACTGTGTGTGTCTCAGTTGCTTGATACAGAACCTTTTGATTGTG TATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATTEST: gi|193641672|gb|FK590174.1|FK590174
genomic: ATAGGAACTGTGTGTGTCTCAGTTGCTTGATACAGAACCTTTTGATTGTGgtatgttcct ... catatttcagTATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATT
EST: AACCTTTTGATTGTG TATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATTEST: gi|151395159|gb|EV265030.1|EV265030
genomic: AACCTTTTGATTGTGgtatgttcct ... catatttcagTATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATT
EST: ATAGGAACTGTGTGTGTCTCAGTTGCTTGATACAGAACCTTTTGATTGTG TATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATTEST: gi|16997316|gb|BM086688.1|BM086688
genomic: ATAGGAACTGTGTGTGTCTCAGTTGCTTGATACAGAACCTTTTGATTGTGgtatgttcct ... catatttcagTATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATT
EST: ATAGGAACTGTGTGTGTCTCAGTTGCTTGATACAGAACCTTTTGATTGTG TATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATTEST: gi|192299719|gb|FG993299.1|FG993299
genomic: ATAGGAACTGTGTGTGTCTCAGTTGCTTGATACAGAACCTTTTGATTGTGgtatgttcct ... catatttcagTATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATT
EST: ATAGGAACTGTGTGTGTCTCAGTTGCTTGATACAGAACCTTTTGATTGTG TATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATT
genomic: ATAGGAACTGTGTGTGTCTCAGTTGCTTGATACAGAACCTTTTGATTGTGgtatgttcct ... catatttcagTATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATT
ggctatactttataataacaaatataaccattttccagtctatctcatatttcagTATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATTCAAGGGGCAGCATCTATAACTTCAGCAGCATCACTCGATAATTCTCTAT
tctatctc CT-rich tract
tactttataataacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccttaagccatttttctggatgatgtatcttggcattgatgagggctatactttataataacaaatataaccattttccagtctatctcatatttcagTATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATTCAAGGGGCAGCATCTATAACTTCAGCAGCATCACTCGATAATTCTCTAT
- - - -agccatt
- - - - - - - - - - gatgatg
- - - - - - - - - - - - - - - - - - - tgatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatataa