1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gattagataacccagaatgtgaaacaccttttggtatggttatccatacaccatcaccaattttattagttcttcctttctctccttcttgaatctgcagCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAAGTCAGCAAACCTGGCAAAGAGCTTGAG
species | Glycine max |
transcript | GLYMA13G06730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAG CATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGACAGTTGEST: gi|298176561|gb|HO023148.1|HO023148
genomic: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGgtatgtgtta ... gaatctgcagCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTG-CAGTTG
EST: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAG CATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAEST: gi|207693353|gb|GD674970.1|GD674970
genomic: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGgtatgtgtta ... gaatctgcagCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGA
EST: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAG CATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAEST: gi|193314323|gb|FK279242.1|FK279242
genomic: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGgtatgtgtta ... gaatctgcagCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGA
EST: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAG CATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGEST: gi|193379920|gb|FK346338.1|FK346338
genomic: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGgtatgtgtta ... gaatctgcagCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTG
EST: TCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAG CATGCTCAAAACACTTGAAAGGTACCAAAAGTGCTGCTATGGTGCAGTTGAEST: gi|193625995|gb|FK576947.1|FK576947
genomic: TCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGgtatgtgtta ... gaatctgcagCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGA
EST: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAG CATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAEST: gi|208200481|gb|GD995586.1|GD995586
genomic: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGgtatgtgtta ... gaatctgcagCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGA
EST: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAG CATGCTCAAAACACTTGEST: gi|208310015|gb|GE109323.1|GE109323
genomic: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGgtatgtgtta ... gaatctgcagCATGCTCAAAACACTTG
EST: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAG CATGCTCAAAACEST: gi|193307377|gb|FK270223.1|FK270223
genomic: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGgtatgtgtta ... gaatctgcagCATGCTCAAAAC
EST: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAG CATGCTCAAAACACTTAGAAAGGTACCAAAAGTGCAGCTATGGTGCEST: gi|193559321|gb|FK513784.1|FK513784
genomic: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGgtatgtgtta ... gaatctgcagCATGCTCAAAACACTT-GAAAGGTACCAAAAGTGCAGCTATGGTGC
EST: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAG CATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGEST: gi|193418766|gb|FK384404.1|FK384404
genomic: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGgtatgtgtta ... gaatctgcagCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTG
EST: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAG CATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGA
genomic: ATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGgtatgtgtta ... gaatctgcagCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGA
atacaccatcaccaattttattagttcttcctttctctccttcttgaatctgcagCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAAGTCAGCAAACCTGGCAAAGAGCTTGAG
ttttattagttcttcc CT-rich tract
aattttattagttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattagataacccagaatgtgaaacaccttttggtatggttatccatacaccatcaccaattttattagttcttcctttctctccttcttgaatctgcagCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAAGTCAGCAAACCTGGCAAAGAGCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT