1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcctcgctgttatgctttcaatttttgttttgtttgtcaagtggatgctagtgaggttgctcagccatgttttaaaattaccctaattcttttgtgtagGTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGATCATATAAGACGTTCTTTAGTTCGTCAAGAGGATAGCATAATCTTCAGT
species | Glycine max |
transcript | GLYMA13G05830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCGCCCCAAAAAGCAATCTTTCTCTCCAGGCACATGCGGCTTCCATCGA GTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGAEST: gi|10845331|gb|BF068478.1|BF068478
genomic: TTCGCCCCAAAAAGCAATCTTTCTCTCCAGGCACATGCGGCTTCCATCGAgtaagagaca ... ttttgtgtagGTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGA
EST: TTCGCCCCAAAAAGCAATCTTTCTCTCCAGGCACATGCGGCTTCCATCGA GTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGA
genomic: TTCGCCCCAAAAAGCAATCTTTCTCTCCAGGCACATGCGGCTTCCATCGAgtaagagaca ... ttttgtgtagGTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGA
atgctagtgaggttgctcagccatgttttaaaattaccctaattcttttgtgtagGTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGATCATATAAGACGTTCTTTAGTTCGTCAAGAGGATAGCATAATCTTCAGT
ccctaat putative branch site (score: 3)
ttcttttgt CT-rich tract
atgttttaaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctcgctgttatgctttcaatttttgttttgtttgtcaagtggatgctagtgaggttgctcagccatgttttaaaattaccctaattcttttgtgtagGTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGATCATATAAGACGTTCTTTAGTTCGTCAAGAGGATAGCATAATCTTCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-tcctcgc
- - - - - - -tgctttc
- - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - -ggatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - aggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcagcca