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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatcttggtcttgtctctagtcaatgtgtgacttggattttttccaatatatatgtttatgtatctgatttttcatgtttctttctggatttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGACATGTTTCTCCGAAATTATAAGTTGGGAAAAACACTCGGCATTGGGTCCT

Basic information

species Glycine max
transcript GLYMA13G05700.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208138998|gb|GD938576.1|GD938576
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|207786728|gb|GD757959.1|GD757959
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|213619572|gb|DB963738.1|DB963738
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|193537535|gb|FK498462.1|FK498462
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|208104672|gb|GD905041.1|GD905041
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|254330248|gb|GR841513.1|GR841513
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|193456839|gb|FK422675.1|FK422675
EST:     CCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: CCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|193580606|gb|FK533979.1|FK533979
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|208188398|gb|GD984720.1|GD984720
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|207792288|gb|GD764194.1|GD764194
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|207827713|gb|GD800306.1|GD800306
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|193345033|gb|FK311659.1|FK311659
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|298197665|gb|HO045144.1|HO045144
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|19270081|gb|BM886337.1|BM886337
EST:     ATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: ATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|207825005|gb|GD796311.1|GD796311
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|193514568|gb|FK471108.1|FK471108
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|193581746|gb|FK534543.1|FK534543
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|208155671|gb|GD958446.1|GD958446
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|208077305|gb|GD877846.1|GD877846
EST:     TCCATTTTCCTTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TCCATTTTCC-TTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
EST: gi|208055031|gb|GD853664.1|GD853664
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACGAGAT
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGAC-AGAT
EST: gi|209725162|gb|BW659832.1|BW659832
EST:     TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCA                         ATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC
genomic: TTCCATTTTCCTTCTCAATCCACCACTCTAACCCTCGCACGCTTCGTTCAgtgagtcttc ... ttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatatatgtttatgtatctgatttttcatgtttctttctggatttgcctctagATTACAAAAATGGACAGATCAACTGGCCGTGGTGGTGGTGGAAGTGTGGACATGTTTCTCCGAAATTATAAGTTGGGAAAAACACTCGGCATTGGGTCCT
                 atctgat  putative branch site (score: 4)
                                            tttgcctct  putative PPT
     atatgtttatgtat  TA-rich tract