Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacactattatccactcaattttccttttttttttttcttgctactcctttatttctaaataaaaaagttttaatttttagcaactattttcatgtttctgatcaatccttcatctgggtgtctcttggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAAGCCAGGTGACTCTTTTCCCAATGCTGCCAAGTGGTACGAGGTTGTCTCA

Basic information

species Glycine max
transcript GLYMA13G04050.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187731|gb|HO031688.1|HO031688
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|192306121|gb|FG996567.1|FG996567
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|31561951|gb|CD487789.1|CD487789
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298199124|gb|HO042487.1|HO042487
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298188411|gb|HO035104.1|HO035104
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|151408969|gb|EV278777.1|EV278777
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|192324601|gb|FK018727.1|FK018727
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTG-TTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|15813521|gb|BI785796.1|BI785796
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|151411456|gb|EV281267.1|EV281267
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|23727229|gb|BU761639.1|BU761639
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|120530743|gb|EH258876.1|EH258876
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|209726224|gb|BW659576.1|BW659576
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|192306122|gb|FG996568.1|FG996568
EST:     GTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298196191|gb|HO044582.1|HO044582
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGCTTAGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298195754|gb|HO044145.1|HO044145
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|13252299|gb|BG363202.1|BG363202
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|19269800|gb|BM886056.1|BM886056
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|21677102|gb|BQ629453.1|BQ629453
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|9986890|gb|BE660998.1|BE660998
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|11689694|gb|BF597370.1|BF597370
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|192325397|gb|FK018368.1|FK018368
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|21888553|gb|BQ741766.1|BQ741766
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|7147148|gb|AW509070.1|AW509070
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|7684853|gb|AW755501.1|AW755501
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|192296410|gb|FG991604.1|FG991604
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACGTCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|10845923|gb|BF068943.1|BF068943
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298165010|gb|HO011059.1|HO011059
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|7030386|gb|AW460169.1|AW460169
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298189176|gb|HO037579.1|HO037579
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAGGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298191835|gb|HO035917.1|HO035917
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298178760|gb|HO024495.1|HO024495
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|7232825|gb|AW568178.1|AW568178
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|5058117|gb|AI736593.1|AI736593
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298194095|gb|HO040743.1|HO040743
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298182324|gb|HO026499.1|HO026499
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|151397794|gb|EV267667.1|EV267667
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|254338855|gb|GR847572.1|GR847572
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|193531740|gb|FK493632.1|FK493632
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|4290538|gb|AI438088.1|AI438088
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|151402451|gb|EV272264.1|EV272264
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298194459|gb|HO042931.1|HO042931
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|19453128|gb|BM954538.1|BM954538
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|7145862|gb|AW507784.1|AW507784
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|27809176|gb|CB063598.1|CB063598
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|11687477|gb|BF595153.1|BF595153
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298165779|gb|HO008750.1|HO008750
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|23054319|gb|BU577619.1|BU577619
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|21256433|gb|BQ453321.1|BQ453321
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298185995|gb|HO031156.1|HO031156
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298169380|gb|HO020740.1|HO020740
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|13181657|gb|BG352997.1|BG352997
EST:     GTCTCAAGTCCCTCGACGAC-TCCTCTCTGGGAAGGTCTACGTTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGA
genomic: GTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACG-TTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGA
EST: gi|151413223|gb|EV283031.1|EV283031
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298174464|gb|HO014609.1|HO014609
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|192300152|gb|FG989274.1|FG989274
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|20448392|gb|BQ252516.1|BQ252516
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|13252205|gb|BG363108.1|BG363108
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|24135799|gb|BU926309.1|BU926309
EST:     TCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: TCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|24135645|gb|BU926155.1|BU926155
EST:     TCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: TCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|10710239|gb|BF009963.1|BF009963
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|58017259|gb|CX704001.1|CX704001
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCAC----GACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|26268359|gb|CA819422.1|CA819422
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGATATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298194123|gb|HO040771.1|HO040771
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|192334024|gb|FK026181.1|FK026181
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTATGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298193589|gb|HO040237.1|HO040237
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298179643|gb|HO024858.1|HO024858
EST:     GGTCTCAGGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|19345952|gb|BM890832.1|BM890832
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|151397515|gb|EV267388.1|EV267388
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298165346|gb|HO011395.1|HO011395
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|23729586|gb|BU762889.1|BU762889
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|254338151|gb|GR845507.1|GR845507
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|9439796|gb|BE440310.1|BE440310
EST:     AAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: AAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298173548|gb|HO016884.1|HO016884
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|6915928|gb|AW397458.1|AW397458
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|15812996|gb|BI785271.1|BI785271
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298187609|gb|HO034758.1|HO034758
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|209707192|gb|BW656810.1|BW656810
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|209726225|gb|BW659577.1|BW659577
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTG-TTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|151409806|gb|EV279614.1|EV279614
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|8284776|gb|BE022335.1|BE022335
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|8826907|gb|BE210637.1|BE210637
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
EST: gi|298194955|gb|HO043427.1|HO043427
EST:     GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGG                         GGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA
genomic: GGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGgtaagcacac ... tggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caactattttcatgtttctgatcaatccttcatctgggtgtctcttggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAAGCCAGGTGACTCTTTTCCCAATGCTGCCAAGTGGTACGAGGTTGTCTCA
               ttctgat  putative branch site (score: 3)
                                      tgtctctt  putative PPT
     attttcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcacactattatccactcaattttccttttttttttttcttgctactcctttatttctaaataaaaaagttttaatttttagcaactattttcatgtttctgatcaatccttcatctgggtgtctcttggttttcagGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAAGCCAGGTGACTCTTTTCCCAATGCTGCCAAGTGGTACGAGGTTGTCTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC