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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaatcaattcatttctcttctctttcacatactcatctttgttttactcattatttacaattgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTCCGTGTGAGGAACAAAGCCATTGGGGTTAATTTCATTGATGTCTACTTTC

Basic information

species Glycine max
transcript GLYMA12G36990.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G36990.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0002g08470.t01 (Vitis vinifera), 3'ss of exon 1
------------------gtaagtaa--atcaattcatttctcttctctttca-catactcatctttgttttactcattatt---tacaattgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTCCGTGTGAGGAACAAAGCCATTGGGGTTAATTTCATTGATGTCTACTTTC
                   | ||||    | | ||     | |   | | | |   | ||        ||||||| | ||     |  ||  | | || |||| |||||||||||||||||  |||| ||||| ||||| ||||| ||| ||||||||| || | | ||||||||  |||| ||| ||||||||||| | |
catatactatgtcctgatttgagtagctgtaattttggagcacccatatatgaatgtgcttccaacatttttacttactagaagatcaaaacgataat-agGTCCTGAAGTGGGAGGATGTTCAAATAGGAGAGCCAAATGAAGGTGAGATCCGTGTGAAGATCCAGGCCATTGGACTTAACTTCGTTGATGTCTACATCC

upper sequence: GLYMA12G36990.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0002g08480.t01 (Vitis vinifera), 3'ss of exon 1
-----------------gtaagt--aaatcaattcatttctcttctctttca-catactcatctttg-ttttactcattatt---tacaattgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTCCGTGTGAGGAACAAAGCCATTGGGGTTAATTTCATTGATGTCTACTTTC
                  ||| |    | ||    || |   |   ||| || |||  |  |      ||||||| ||||     |  || || |||| |||| ||||||||||||||||| ||||| ||||| ||||| || || ||| || |||||| |||| | ||||| |||||||| ||||||||||||||||| |
ttctgattggagtagctctaattttggagcaccatatatgcatgtgcttccaacattattgttgccaattttacttattagaagatcaaaatgatgat-agGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATCTGTGTGAAGAACCAGGCCATCGGGGTTAACTTCATTGATGTCTACTTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15813075|gb|BI785350.1|BI785350
EST:     CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAA                         GTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
genomic: CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAAgtaagtaaat ... tgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
EST: gi|298177857|gb|HO027410.1|HO027410
EST:     CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAA                         GTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
genomic: CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAAgtaagtaaat ... tgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
EST: gi|151395021|gb|EV264892.1|EV264892
EST:     CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAA                         GTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
genomic: CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAAgtaagtaaat ... tgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
EST: gi|4313864|gb|AI460983.1|AI460983
EST:     CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAA                         GTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
genomic: CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAAgtaagtaaat ... tgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
EST: gi|213590530|gb|DB973303.1|DB973303
EST:     CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAA                         GTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
genomic: CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAAgtaagtaaat ... tgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
EST: gi|298195816|gb|HO044207.1|HO044207
EST:     CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAA                         GTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
genomic: CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAAgtaagtaaat ... tgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
EST: gi|254331742|gb|GR843592.1|GR843592
EST:     CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAA                         GTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
genomic: CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAAgtaagtaaat ... tgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
EST: gi|298191369|gb|HO038848.1|HO038848
EST:     CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGCGGCCCTCAA                         GTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
genomic: CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAAgtaagtaaat ... tgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
EST: gi|192306490|gb|FG996194.1|FG996194
EST:     CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAA                         GTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
genomic: CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAAgtaagtaaat ... tgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
EST: gi|298175464|gb|HO015097.1|HO015097
EST:     CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAA                         GTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC
genomic: CATCAGACATGGTGAAGGCAATCAGAGTTCACGAACTCGGTGGCCCTCAAgtaagtaaat ... tgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctctttcacatactcatctttgttttactcattatttacaattgttgatcagGTTCTGAAGTGGGAGGATGTGGAAATTGGAGATCCAAAAGAAGGCGAGGTCCGTGTGAGGAACAAAGCCATTGGGGTTAATTTCATTGATGTCTACTTTC
                         ttttactcattattta  TA-rich tract