1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatatactggatattatgtgttcttgcatttctctttgacttttatgagctggaaaactgtttcgcagtgatggttaagaacttaaatgttcttgtgcagGTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCTAAGAAACTGGAAGAACTTGGAAATTTGATAACCAGTTTGGATGCTGGGG
species | Glycine max |
transcript | GLYMA12G35840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACA GTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCTEST: gi|9986303|gb|BE660411.1|BE660411
genomic: GGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACAgtgagttttt ... tcttgtgcagGTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCT
EST: GGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACA GTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCTEST: gi|213600849|gb|DB958427.1|DB958427
genomic: GGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACAgtgagttttt ... tcttgtgcagGTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCT
EST: GGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACA GTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCT
genomic: GGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACAgtgagttttt ... tcttgtgcagGTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCT
tgagctggaaaactgtttcgcagtgatggttaagaacttaaatgttcttgtgcagGTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCTAAGAAACTGGAAGAACTTGGAAATTTGATAACCAGTTTGGATGCTGGGG
tgttctt CT-rich tract
ttaagaacttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatactggatattatgtgttcttgcatttctctttgacttttatgagctggaaaactgtttcgcagtgatggttaagaacttaaatgttcttgtgcagGTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCTAAGAAACTGGAAGAACTTGGAAATTTGATAACCAGTTTGGATGCTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- -atactgg
- - - - - - - - tgtgttc
- - - - - - - - - - - - -gcatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgatgg