1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttagctatataagtataattgagatctccaatatttcacgacattaattaatgtcttttattggtgacaaattaacatgtttttgtatttgttttgtagGTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGGGTGACTGTGGACGAACCAGGAAAGAGTCTAGTGCATTACTGGAGTGACG
species | Glycine max |
transcript | GLYMA12G34960.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCATAGTGATGTATTTGTTGCCCCTTCTGGCTATAATGCTCCTCAGCAG GTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGGEST: gi|18040173|gb|BM308467.1|BM308467
genomic: TTCATAGTGATGTATTTGTTGCCCCTTCTGGCTATAATGCTCCTCAGCAGgtacctcttt ... tgttttgtagGTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGG
EST: TTCATAGTGATGTATTTGTTGCCCCTTCTGGCTATAATGCTCCTCAGCAG GTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGGEST: gi|298177766|gb|HO027319.1|HO027319
genomic: TTCATAGTGATGTATTTGTTGCCCCTTCTGGCTATAATGCTCCTCAGCAGgtacctcttt ... tgttttgtagGTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGG
EST: TTCATAGTGATGTATTTGTTGCCCCTTCTGGCTATAATGCTCCTCAGCAG GTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGGEST: gi|16997191|gb|BM086563.1|BM086563
genomic: TTCATAGTGATGTATTTGTTGCCCCTTCTGGCTATAATGCTCCTCAGCAGgtacctcttt ... tgttttgtagGTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGG
EST: TTCATAGTGATGTATTTGTTGCCCCTTCTGGCTATAATGCTCCTCAGCAG GTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGGEST: gi|18735287|gb|BM528677.1|BM528677
genomic: TTCATAGTGATGTATTTGTTGCCCCTTCTGGCTATAATGCTCCTCAGCAGgtacctcttt ... tgttttgtagGTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGG
EST: TTCATAGTGATGTATTTGTTGCCCCTTCTGGCTATAATGCTCCTCAGCAG GTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGG
genomic: TTCATAGTGATGTATTTGTTGCCCCTTCTGGCTATAATGCTCCTCAGCAGgtacctcttt ... tgttttgtagGTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGG
taattaatgtcttttattggtgacaaattaacatgtttttgtatttgttttgtagGTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGGGTGACTGTGGACGAACCAGGAAAGAGTCTAGTGCATTACTGGAGTGACG
aattaac putative branch site (score: 2)
tttgtttt putative PPT
aaattaacatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagctatataagtataattgagatctccaatatttcacgacattaattaatgtcttttattggtgacaaattaacatgtttttgtatttgttttgtagGTTCATATAACACAAGGTGACCAAGTGGGAAGGGCCATGATCGTGTCATGGGTGACTGTGGACGAACCAGGAAAGAGTCTAGTGCATTACTGGAGTGACG
- - - - - - - - - - - - - - - - - - -cacgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttt