1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaataattgctgcttgctgcattctttaacaatggctatgttttgttttttgaattaatgttgaaaagcttcgttgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACGTATAGTGAAGGAGCTGCATTCTTATGAGAAGGAAGTTGAGAGAGAAGCT
species | Glycine max |
transcript | GLYMA12G34820.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGGTACCGTCGTTGCAT AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACGEST: gi|15812346|gb|BI784621.1|BI784621
genomic: ACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGGTACCGTCGTTGCATgtaataattg ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: ACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGGTACCGTCGTTGCAT AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACGEST: gi|298179443|gb|HO027914.1|HO027914
genomic: ACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGGTACCGTCGTTGCATgtaataattg ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: ACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGGTACCGTCGTTGCAT AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACGEST: gi|207795668|gb|GD766889.1|GD766889
genomic: ACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGGTACCGTCGTTGCATgtaataattg ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: ACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGGTACCGTCGTTGCAT AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACGEST: gi|151410637|gb|EV280452.1|EV280452
genomic: ACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGGTACCGTCGTTGCATgtaataattg ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
EST: ACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGGTACCGTCGTTGCAT AATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
genomic: ACGCAGCGTTTTGATCTCAGATTTGAGGGGGAGAGGTACCGTCGTTGCATgtaataattg ... tgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACG
caatggctatgttttgttttttgaattaatgttgaaaagcttcgttgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACGTATAGTGAAGGAGCTGCATTCTTATGAGAAGGAAGTTGAGAGAGAAGCT
aattaat putative branch site (score: 3)
cttcgtt putative PPT
ttttgttttttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataattgctgcttgctgcattctttaacaatggctatgttttgttttttgaattaatgttgaaaagcttcgttgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACGTATAGTGAAGGAGCTGCATTCTTATGAGAAGGAAGTTGAGAGAGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC