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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgatattcaatcaagaagagtctgatattctatttctctattaagagatttgatttaccatattaaatatatttatctatttattggtataaattgcagGAAATGTCAGCTCCTGTCGCAGATGGTAATGATGCACTCACTGGTCACATAATCTCAACCACAATTGCAGGCAAAAATGGCGAACCTAAACAA

Basic information

species Glycine max
transcript GLYMA12G33950.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G33950.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G30980.1 (Arabidopsis thaliana), 3'ss of exon 1
ctgatattcaatcaagaagagtctgat-------attctatttctctattaagagatttgatttaccatattaaatatatttatctatttattggtataaattgcagGAAATGTCAGCTCCTGTCGCAGATGGTAATGATGCACTCACTGGTCACATAATCTCAACCACAATTGCAGGCAAAAATGGCGAACCTAAACAA
    ||| ||    || | |  || ||       | | |  |||  | ||   |||   || |     ||     | || | || | || |   || | | ||  |||||||||| ||| ||||   ||| || ||||||||  | || ||||||||||| || || ||||||| |||||||||||| ||||||||||| 
----tatacatcggaggaaacactaattgttactactttccttcattctttgtagacaagaatagttttaactcctgtaataatatgttcac--gtttgattt-tagGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCACATAATTTCTACTACAATTGGAGGCAAAAATGGTGAACCTAAACAG

upper sequence: GLYMA12G33950.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 3'ss of exon 1
--ctgatattcaatcaagaagagtctgatattctatttctctat-taagagatttgatttaccatattaaatatatttatctatttattggtataaattgcagGAAATGTCAGCTCCTGTCGCAGATGGTAATGATGCACTCACTGGTCACATAATCTCAACCACAATTGCAGGCAAAAATGGCGAACCTAAACAA
    || ||   | | || |       | ||| |  |  |  |  |||  |   || | |     ||| | | ||||   ||||   ||| | | |||||||||||||||||||| ||||    || || |||||| || |||||||||| ||||| || ||||| |||| |||||||||||| || |||||||| 
tttagaaatagcagctagcaatagggaagattatcctatttgacataattggcatg-tattttgcatttattttattc--ctatgacttgatgtgaattgcagGAAATGTCAGCTGCTGTTATTGAGGGGAATGATCCAGTCACTGGTCATATAATTTCCACCACCATTGGAGGCAAAAATGGAGAGCCTAAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagatttgatttaccatattaaatatatttatctatttattggtataaattgcagGAAATGTCAGCTCCTGTCGCAGATGGTAATGATGCACTCACTGGTCACATAATCTCAACCACAATTGCAGGCAAAAATGGCGAACCTAAACAA
   atttgat  putative branch site (score: 5)
        atttaccatattaaat  TA-rich tract