Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcgtgtgctgcatgttcaagttgtggtgccgaacttaagagattttatcagatgtgaggctttatttgtgatgttttgattttgcgtttgtttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGC

Basic information

species Glycine max
transcript GLYMA12G33800.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G33800.3 (Glycine max), 3'ss of exon 1
lower sequence: PP1S67_176V6.1 (Physcomitrella patens), 3'ss of exon 1
tcgtgtgctgcatgttcaagttgtggtgccgaacttaagagattttatcagatgtgaggctttatttgtgatg--ttttgattttgcgtttgtttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGC
     ||    |   | |||  ||  |   | |      |   |   | ||      |  |  ||  ||||||     ||  || |   ||||   | |||||||||||||| || |||||||| || ||||| || || || || ||||| || |||||||| ||| |  | ||||| || ||||||||||||||||||||
--acatgaattactgtgaaggagtattttaggaaagcgaaatgtaccttagcgacatgtttcgatgggtgatggaccgtgcgttgggtcttgtgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGATGTGGAGCTGACAGTAGAGGAGCGAAATCTCTTGTCTGTGGGTTACAAGAATGTGATTGGTGC

upper sequence: GLYMA12G33800.3 (Glycine max), 3'ss of exon 1
lower sequence: PP1S201_25V6.1 (Physcomitrella patens), 3'ss of exon 1
-----tcgtgtgctgcatgttcaagttgtggtgccgaacttaagagattttatcagatgtgaggctttatttgtgatgttttgattttgcgtttgtttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGC
     | || |  || | |  | |  ||||   | | || |  ||  |||| |  || ||     | ||| |     | |    | ||||||| |      ||||| |||||||| || |||||||| || ||||| || ||||| ||||| || ||||||||||| ||| |  | || || || ||||||||||| || || ||
aaaagtagtat-ttgtaggaacgaactgtgcaactgcacgt--gatcttttcttgga-gtcgttgtatatgtccacagctcatgtattgcgtt-gccaactgcagAAATGGTGGAGTCGATGAAGAAAGTCGCGAAGCTTGACGTGGAACTTACAGTGGAGGAGCGAAATCTCTTGTCCGTGGGTTACAAGAATGTAATCGGAGC

upper sequence: GLYMA12G33800.3 (Glycine max), 3'ss of exon 1
lower sequence: PP1S348_9V6.1 (Physcomitrella patens), 3'ss of exon 1
tcgtgtgctgcatgttcaagttgtggtgccgaacttaagagattttatcagatgtgaggctttatttgtgatgttttgattttgcg------tttgtttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGC
    ||  ||||  |   ||     |    ||        |         |  | | || | | || |||     | ||   || |      |||||   | |||||||||||||| || |||||||| || ||||| || ||||| || ||||| ||||||||||| ||| | || ||||| || |||||||| |||||||| ||
----gt-ttgcagttgggaggcagagacgtgagtgcggttgggcccggtgggcg-gcggttgtgttggtggatgatggagcgtgtggtgcgttttgtgaattgcagAGATGGTGGAGTCGATGAAGAAAGTGGCGAAGCTTGACGTGGAGCTGACGGTGGAGGAGCGCAATCTGCTGTCTGTGGGTTACAAGAACGTGATTGGAGC

upper sequence: GLYMA12G33800.3 (Glycine max), 3'ss of exon 1
lower sequence: PP1S46_127V6.1 (Physcomitrella patens), 3'ss of exon 1
------tcgtgtgctgcatgttcaagttgtggtgccga--acttaagagattttatcagatgtgaggctttatttgtgatgttttgattttgcgtttgtttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGC
      || |  |   ||| |    ||  ||  |  |   | |||||  | | |||| |   |  |||||  ||||   | || |||||     ||||      ||||||||||||||||| |||||||| ||||| || || || || || ||||| || |||||||| ||| |  | || || || || |||||||| || || ||
aaccaatcataggaaacat-tcagggtcatgtcgtagggtatttaagtcagtatatctg-catttggctt-gtttg---ttttgtgattcgtaatttga--actgcagAGATGGTGGAATCGATGAAGAAGGTTGCCAAGCTTGATGTGGAGCTGACAGTAGAGGAGCGAAATCTCTTGTCCGTGGGTTATAAGAATGTCATCGGAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193347298|gb|FK313072.1|FK313072
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|209729591|gb|BW651892.1|BW651892
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|209711177|gb|BW676450.1|BW676450
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|254326694|gb|GR832846.1|GR832846
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|193698540|gb|FK634935.1|FK634935
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|192332263|gb|FK023912.1|FK023912
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208031013|gb|GD828057.1|GD828057
EST:     CCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: CCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208333523|gb|GE129508.1|GE129508
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|9901950|gb|BE610918.1|BE610918
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGT--AATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|18690835|gb|BM519683.1|BM519683
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208032859|gb|GD830490.1|GD830490
EST:     GAACTTCGTCTACATCGCCAAGCTCGCTGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|209725723|gb|BW659852.1|BW659852
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208132502|gb|GD930365.1|GD930365
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGATCAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|163922893|gb|EH039539.1|EH039539
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|298180119|gb|HO025334.1|HO025334
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|193315157|gb|FK282553.1|FK282553
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACT
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGG-AATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACT
EST: gi|193623248|gb|FK577762.1|FK577762
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|193385809|gb|FK352823.1|FK352823
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208337522|gb|GE138068.1|GE138068
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|10231294|gb|BE800182.1|BE800182
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|193390514|gb|FK356434.1|FK356434
EST:     CATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: CATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|8283256|gb|BE020817.1|BE020817
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|193626307|gb|FK572671.1|FK572671
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|192321936|gb|FK012488.1|FK012488
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATTCGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|193483601|gb|FK451528.1|FK451528
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|193699085|gb|FK636278.1|FK636278
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|22521737|gb|BU080548.1|BU080548
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208056660|gb|GD850349.1|GD850349
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|192294937|gb|FG986656.1|FG986656
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|207817395|gb|GD789356.1|GD789356
EST:     CCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: CCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|151399284|gb|EV269155.1|EV269155
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208136793|gb|GD935063.1|GD935063
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|21600800|gb|BQ611131.1|BQ611131
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208038734|gb|GD835012.1|GD835012
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|193567757|gb|FK526432.1|FK526432
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|7234848|gb|AW570181.1|AW570181
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|151404414|gb|EV274224.1|EV274224
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTCGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|254345746|gb|GR859393.1|GR859393
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|193644995|gb|FK592133.1|FK592133
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|209703892|gb|BW670747.1|BW670747
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208323285|gb|GE123522.1|GE123522
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|193373613|gb|FK338873.1|FK338873
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGT
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGT
EST: gi|193459746|gb|FK425143.1|FK425143
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208125866|gb|GD922044.1|GD922044
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|41145511|gb|CK605722.1|CK605722
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208049792|gb|GD844999.1|GD844999
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208183237|gb|GD981459.1|GD981459
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|208272608|gb|GE067052.1|GE067052
EST:     TCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: TCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|15338139|gb|BI498795.1|BI498795
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|209720644|gb|BW677513.1|BW677513
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|207709356|gb|GD691048.1|GD691048
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAATGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|193318006|gb|FK283764.1|FK283764
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|192324165|gb|FK017896.1|FK017896
EST:     CCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: CCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|193346599|gb|FK311771.1|FK311771
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
EST: gi|192322095|gb|FK012199.1|FK012199
EST:     GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATTCGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG
genomic: GAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcagatgtgaggctttatttgtgatgttttgattttgcgtttgtttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGC
                            ttttgat  putative branch site (score: 4)
                                         tttgttt  putative PPT
                            ttttgatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcgtgtgctgcatgttcaagttgtggtgccgaacttaagagattttatcagatgtgaggctttatttgtgatgttttgattttgcgtttgtttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG