1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcgttgattctggatcacgtgcttgtgttttctttcctctatgcgaaatttgtagctttacatgacgtacttacatctgcaacatttctgttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCGGTGCGTCCTCTGCGCTGCTGAAGCTTGGGCTTCTTGGTGGAATTGGTTT
species | Glycine max |
transcript | GLYMA12G33520.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAACCCCCAAACCCCTCACTCTTCTCGGCGTCCATCGGAAATTTCCAAG GTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCGEST: gi|254329670|gb|GR839223.1|GR839223
genomic: CCAACCCCCAAACCCCTCACTCTTCTCGGCGTCCATCGGAAATTTCCAAGgtactacatc ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCG
EST: ATCGGAAATTTCCAAG GTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCGEST: gi|192329319|gb|FK020238.1|FK020238
genomic: ATCGGAAATTTCCAAGgtactacatc ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCG
EST: CCAACCCCCAAACCCCTCACTCTTCTCGGCGTCCATCGGAAATTTCCAAG GTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCGEST: gi|12497305|gb|BG047500.1|BG047500
genomic: CCAACCCCCAAACCCCTCACTCTTCTCGGCGTCCATCGGAAATTTCCAAGgtactacatc ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCG
EST: TCTCGGCGTCCATCGGAAATTTCCAAG GTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCGEST: gi|151402542|gb|EV272355.1|EV272355
genomic: TCTCGGCGTCCATCGGAAATTTCCAAGgtactacatc ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCG
EST: CCAACCCCCAAACCCCTCACTCTTCTCGGCGTCCATCGGAAATTTCCAAG GTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCGEST: gi|192303429|gb|FG997459.1|FG997459
genomic: CCAACCCCCAAACCCCTCACTCTTCTCGGCGTCCATCGGAAATTTCCAAGgtactacatc ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCG
EST: CCAACCCCCAAACCCCTCACTCTTCTCGGCGTCCATCGGAAATTTCCAAG GTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCGEST: gi|151412668|gb|EV282480.1|EV282480
genomic: CCAACCCCCAAACCCCTCACTCTTCTCGGCGTCCATCGGAAATTTCCAAGgtactacatc ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCG
EST: CCAACCCCCAAACCCCTCACTCTTCTCGGCGTCCATCGGAAATTTCCAAG GTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCGEST: gi|151413130|gb|EV282938.1|EV282938
genomic: CCAACCCCCAAACCCCTCACTCTTCTCGGCGTCCATCGGAAATTTCCAAGgtactacatc ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCG
EST: CCAACCCCCAAACCCCTCACTCTTCTCGGCGTCCATCGGAAATTTCCAAG GTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCG
genomic: CCAACCCCCAAACCCCTCACTCTTCTCGGCGTCCATCGGAAATTTCCAAGgtactacatc ... gttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCG
gaaatttgtagctttacatgacgtacttacatctgcaacatttctgttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCGGTGCGTCCTCTGCGCTGCTGAAGCTTGGGCTTCTTGGTGGAATTGGTTT
tacttac putative branch site (score: 1)
tttctgttc putative PPT
ttcaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgttgattctggatcacgtgcttgtgttttctttcctctatgcgaaatttgtagctttacatgacgtacttacatctgcaacatttctgttcaattagGTAAAAAGATGAATCTGAAGAACATGAAGATTCCGAACGTTCCAGGCGGCGGTGCGTCCTCTGCGCTGCTGAAGCTTGGGCTTCTTGGTGGAATTGGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - gattctg
- - - - - - - - cacgtgc
- - - - - - - - - - - - - - - - - - - tctatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catctgc