1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gggggagggggggatgcagtgagtgttagaactggctttgttgtattgtagtaataataatcgatttgttgtgtgcttgtttttcttgggttgtgtgaagGTGGATTGGACCCCAGAATTACACAGGCGATTCGTGCAAGCAGTGGAGCAGCTTGGAGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAA
species | Glycine max |
transcript | GLYMA12G33430.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAATCATGCAGCAAGGAATAATAATCCTCAGGGGAAGAGAAAGGTTAAG GTGGATTGGACCCCAGAATTACACAGGCGATTCGTGCAAGCAGTGGAGCAGEST: gi|120533943|gb|EH262076.1|EH262076
genomic: CAAATCATGCAGCAAGGAATAATAATCCTCAGGGGAAGAGAAAGGTTAAGgtaagttgtt ... ttgtgtgaagGTGGATTGGACCCCAGAATTACACAGGCGATTCGTGCAAGCAGTGGAGCAG
EST: CAAATCATGCAGCAAGGAATAATAATCCTCAGGGGAAGAGAAAGGTTAAG GTGGATTGGACCCCAGAATTACACAGGCGATTCGTGCAAGCAGTGGAGCAGEST: gi|209702169|gb|BW664231.1|BW664231
genomic: CAAATCATGCAGCAAGGAATAATAATCCTCAGGGGAAGAGAAAGGTTAAGgtaagttgtt ... ttgtgtgaagGTGGATTGGACCCCAGAATTACACAGGCGATTCGTGCAAGCAGTGGAGCAG
EST: CAAATCATGCAGCAAGGAATAATAATCCTCAGGAGAAGAGAAAGGTTAAG GTGGATTGGACCCCAGAATTACACAGGCGATTCGTGCAAGCAGTGGAGCAG
genomic: CAAATCATGCAGCAAGGAATAATAATCCTCAGGGGAAGAGAAAGGTTAAGgtaagttgtt ... ttgtgtgaagGTGGATTGGACCCCAGAATTACACAGGCGATTCGTGCAAGCAGTGGAGCAG
ttgtagtaataataatcgatttgttgtgtgcttgtttttcttgggttgtgtgaagGTGGATTGGACCCCAGAATTACACAGGCGATTCGTGCAAGCAGTGGAGCAGCTTGGAGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAA
taataataatcgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggggagggggggatgcagtgagtgttagaactggctttgttgtattgtagtaataataatcgatttgttgtgtgcttgtttttcttgggttgtgtgaagGTGGATTGGACCCCAGAATTACACAGGCGATTCGTGCAAGCAGTGGAGCAGCTTGGAGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- gggaggg
- - - - - -ggatgca
- - - - - - - - - -tgagtgt
- - - - - - - - - - - - - - - - -ggctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtg