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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactataataacataacataatatatatttgtattgaatttttcagttagataataattattttggattaattttagGTGATTACAGCATATGGAGTTGGCAGGGTAATAGGATCTAAAGACAGCAAGTACACGGAGGGTGATCTTATATTAACTCCTTCTGCGCCAGTGGCTGAGT

Basic information

species Glycine max
transcript GLYMA12G31970.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197320|gb|HO044799.1|HO044799
EST:     TCACCGGCACCCTCGACGGTCTTTACATTCAGCAATATCCACTCAACGAG                         GTGATTACAGCATATGGAGTTGGCAGGGTAATAGGATCTAAAGACAGCAAG
genomic: TCACCGGCACCCTCGACGGTCTTTACATTCAGCAATATCCACTCAACGAGgtactataat ... ttaattttagGTGATTACAGCATATGGAGTTGGCAGGGTAATAGGATCTAAAGACAGCAAG
EST: gi|209702812|gb|BW675708.1|BW675708
EST:     TCACCGGCACCCTCGACGGTCTTTACATTCAGCAATATCCACTCAACGAG                         GTGATTACAGCATATGGAGTTGGCAGGGTAATAGGATCTAAAGACAGCAAG
genomic: TCACCGGCACCCTCGACGGTCTTTACATTCAGCAATATCCACTCAACGAGgtactataat ... ttaattttagGTGATTACAGCATATGGAGTTGGCAGGGTAATAGGATCTAAAGACAGCAAG
EST: gi|298195000|gb|HO043528.1|HO043528
EST:     TCACCGGCACCCTCGACGGTCTTTACATTCAGCAATATCCATTCAACGAG                         GTGATTACAGCATATGGAGTTGGCAGGGTAATAGGATCTAAAGACAGCAAG
genomic: TCACCGGCACCCTCGACGGTCTTTACATTCAGCAATATCCACTCAACGAGgtactataat ... ttaattttagGTGATTACAGCATATGGAGTTGGCAGGGTAATAGGATCTAAAGACAGCAAG
EST: gi|26047297|gb|CA784133.1|CA784133
EST:     TCACCGGCACCCTCGACGGTCTTTACATTCAGCAATATCCACTCAACGAG                         GTGATTACAGCATATGGAGTTGGCAGGGTAATAGGATCTAAAGACAGCAAG
genomic: TCACCGGCACCCTCGACGGTCTTTACATTCAGCAATATCCACTCAACGAGgtactataat ... ttaattttagGTGATTACAGCATATGGAGTTGGCAGGGTAATAGGATCTAAAGACAGCAAG
EST: gi|13481338|gb|BG510681.1|BG510681
EST:     TCACCGGCACCCTCGACGGTCTTTACATTCAGCAATATCCACTCAACGAG                         GTGATTACAGCATATGGAGTTGGCAGGGTAATAGGATCTAAAGACAGCAAG
genomic: TCACCGGCACCCTCGACGGTCTTTACATTCAGCAATATCCACTCAACGAGgtactataat ... ttaattttagGTGATTACAGCATATGGAGTTGGCAGGGTAATAGGATCTAAAGACAGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatttgtattgaatttttcagttagataataattattttggattaattttagGTGATTACAGCATATGGAGTTGGCAGGGTAATAGGATCTAAAGACAGCAAGTACACGGAGGGTGATCTTATATTAACTCCTTCTGCGCCAGTGGCTGAGT
                                           gattaat  putative branch site (score: 3)
              aatttttcagttagat  TA-rich tract