1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cctgtatttacccccgttgtaatatttaaattcaatttttatacaatttgatgtaatgagataaattagggcagggttattgatttctggttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAAAAGGGACCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCA
species | Glycine max |
transcript | GLYMA12G31740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAEST: gi|192306233|gb|FG996847.1|FG996847
genomic: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
EST: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAEST: gi|192330326|gb|FK019876.1|FK019876
genomic: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
EST: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAEST: gi|10233586|gb|BE802474.1|BE802474
genomic: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
EST: GTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAEST: gi|151411977|gb|EV281788.1|EV281788
genomic: GTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
EST: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAEST: gi|13790864|gb|BG653455.1|BG653455
genomic: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
EST: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAEST: gi|151407416|gb|EV277231.1|EV277231
genomic: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
EST: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAEST: gi|24205709|gb|BU964962.1|BU964962
genomic: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
EST: GCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAEST: gi|13790863|gb|BG653454.1|BG653454
genomic: GCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
EST: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAEST: gi|298179193|gb|HO027664.1|HO027664
genomic: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
EST: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCACCGTCCAAAATGGGTAAAGCTAAEST: gi|298183536|gb|HO028749.1|HO028749
genomic: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
EST: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAEST: gi|209717530|gb|BW679664.1|BW679664
genomic: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
EST: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAEST: gi|151408961|gb|EV278769.1|EV278769
genomic: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
EST: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAG GGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
genomic: GCATCGTTCTGTCTCTCACGCGCCGCTTGGCTCTCAGCCCCGGCCTGCAGgtactcctcc ... ttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAA
atttgatgtaatgagataaattagggcagggttattgatttctggttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAAAAGGGACCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCA
tattgat putative branch site (score: 3)
taatgagataaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgtatttacccccgttgtaatatttaaattcaatttttatacaatttgatgtaatgagataaattagggcagggttattgatttctggttgtgaccagGGTTTTGCATAATCTAGCTCTTTTTTCTCCGTCCAAAATGGGTAAAGCTAAAAAGGGACCAAAGTTTGCTGTTATGAAGAAGATTGTTACTTCCAAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
cctgtat
- - - - taccccc
- - - - - - - - - - - - - - - - - - - - - - - - tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcaggg