1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaggtttcttttcttttattctcttttgggaaaataataataatcgattataatttcctttgcttcgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG
species | Glycine max |
transcript | GLYMA12G28900.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGAGGCCTAGAA-CTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGGEST: gi|11413290|gb|BF425301.1|BF425301
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: GCAGAGGCCTANAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG GGAACAAGGACTTTGAGTTTCAAGAGGCTGCTGCTGCNTCCTTCTCTTGGGEST: gi|254317828|gb|GR826812.1|GR826812
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
ctcttttgggaaaataataataatcgattataatttcctttgcttcgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG
tttcctttgcttc CT-rich tract
aaaataataataatcg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtttcttttcttttattctcttttgggaaaataataataatcgattataatttcctttgcttcgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGGATTCATTTATCGCGTAGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC