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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgtaatatggctatgctttgcttgttcccatcttcttaatcaatcaaaatcaaaatttactgcttctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGGTATGTTTCTTTCTTTCTTTCCATTTCACGCTTTTCCTT

Basic information

species Glycine max
transcript GLYMA12G28670.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28670.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 3'ss of exon 3
gtactgtgt---aatatggctatgctttgcttgttcccatcttcttaatcaatcaaaatcaaaatttactgcttctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGGTATGTTTCTTTCTTTCTTTCCATTTCACGCTTTTCCTT
|||| || |   |||      |     |   || | |     | |   |   | | | || |||   |     | |   |  ||||||| || |||||||| || |||||||| || |||||||||||||| || || |||||||                                       
gtacagttttttaatcaaaggaaatcatctgtggtacttgtgtttaggtttttaatattctaaaaggatgttatgttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACG---------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttcccatcttcttaatcaatcaaaatcaaaatttactgcttctcctttcagGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGGTATGTTTCTTTCTTTCTTTCCATTTCACGCTTTTCCTT
             tcttaat  putative branch site (score: 3)
                                   tttactgcttctcctt  putative PPT
            ttcttaatcaatcaaa  TA-rich tract