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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttaaatttttgcatcactcttccttcttccatttagtatgttcaattccaaaaatactgaaacagtttggttcttcaagTTTAAAATGAGAGAACGCCAGATGTGCAATGTTGTTTGTCGGCTAACTCTCAATGCAAAAACAGCTAGA

Basic information

species Glycine max
transcript GLYMA12G23900.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G23900.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv11s0037g00210.t01 (Vitis vinifera), 3'ss of exon 2
----gttgg----ttaaatttttgcatcactcttccttct-tccatttagtatgttcaattccaaaaatactgaaacagtttggttcttcaagTTTAAAATGAGAGAACGCCAGATGTGCAATGTTGTTTGTCGGCTAACTCTCAATGCAAAAACAGCTAGA-------------------------------
    ||| |     | |||  ||   | |  || | || | ||| |||  | | | || ||    |  | || | | |   || || ||  ||||||||||| ||||||  ||||||||||||||||| |||||  |    || ||||| ||||| || |                                 
gtctgttagagttcttaatactttagtgatcctcctttatatccttttcctgtatgcagtttattagtttctaacagaagctgtttgttgcagTTTAAAATGCGAGAACCACAGATGTGCAATGTTGTATGTCGTATGGAGCTGAATGCCAAAACTGCAAAGGAGTTCAAGGAAAAGATAGATGATGAGTATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttccatttagtatgttcaattccaaaaatactgaaacagtttggttcttcaagTTTAAAATGAGAGAACGCCAGATGTGCAATGTTGTTTGTCGGCTAACTCTCAATGCAAAAACAGCTAGA
                                              ttcttc  CT-rich tract
      atttagtat  TA-rich tract