1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttcccagattttagttgaaaattgcccgaggcttattatggtgaaaacagcaatttaatattatctttgaatgatttgaatttgttttgtttggctgcagGTTGTGTATTACATGAATCGTTGGTTGAAAGATGTTTGACTGTGGTTACAAGTCGCAATATGTGGGTGGGCAATGTGAAAAATTTGTGAG
species | Glycine max |
transcript | GLYMA12G23890.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGATTTCGCTTCAATCTTCCATCCCCGTTCCGTTCAATTCTACTTTCAAG GTTGTGTATTACATGAATCGTTGGTTGAAAGATGTTTGACTGTGGTTACAAEST: gi|209698519|gb|BW652398.1|BW652398
genomic: AGATTTCGCTTCAATCTTCCATCCCCGTTCCGTTCAATTCTACTTTCAAGgtccgattcc ... ttggctgcagGTTGTGTATTACATGAATCGTTGGTTGAAAGATGTTTGACTGTGGTTACAA
EST: AGATTTCGCTTCAATCTTCCATCCCCGTTCCGTTCAATTCTACTTTCAAG GTTGTGTATTACATGAATCGTTGGTTGAAAGATGTTTGACTGTGGTTACAAEST: gi|209714599|gb|BW654124.1|BW654124
genomic: AGATTTCGCTTCAATCTTCCATCCCCGTTCCGTTCAATTCTACTTTCAAGgtccgattcc ... ttggctgcagGTTGTGTATTACATGAATCGTTGGTTGAAAGATGTTTGACTGTGGTTACAA
EST: AGATTTCGCTTCAATCTTCCATCCCCGTTCCGTTCAATTCTACTTTCAAG GTTGTGTATTACATGAATCGTTGGTTGAAAGATGTTTGACTGTGGTTACAA
genomic: AGATTTCGCTTCAATCTTCCATCCCCGTTCCGTTCAATTCTACTTTCAAGgtccgattcc ... ttggctgcagGTTGTGTATTACATGAATCGTTGGTTGAAAGATGTTTGACTGTGGTTACAA
aacagcaatttaatattatctttgaatgatttgaatttgttttgtttggctgcagGTTGTGTATTACATGAATCGTTGGTTGAAAGATGTTTGACTGTGGTTACAAGTCGCAATATGTGGGTGGGCAATGTGAAAAATTTGTGAG
atttaat putative branch site (score: 4)
ttttgttt putative PPT
aatttaatattatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcccagattttagttgaaaattgcccgaggcttattatggtgaaaacagcaatttaatattatctttgaatgatttgaatttgttttgtttggctgcagGTTGTGTATTACATGAATCGTTGGTTGAAAGATGTTTGACTGTGGTTACAAGTCGCAATATGTGGGTGGGCAATGTGAAAAATTTGTGAG
ttcccag
- - - - - - - - - - attgccc
- - - - - - - - - - - - - - - - - - tatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg