Sequence
atgc intronic sequence ATGC exonic sequence...aaacaaataatgaagaatgcgatcgaatgtgaagatacatgaataattaatttgatgacacaagatcatctaatggtgtatgatgattgtgcaagtgcagGTAGTGCGTAAGCCCGCACACCTCTTCCTAGACGAGCTTGGTCTTGAGTATGACGAACAAGACAACTACGTGGTGATCAAGCACGCTGCATTGTTCACTT
Basic information
species | Glycine max |
transcript | GLYMA12G16380.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17023293|gb|BM094327.1|BM094327EST: TCAGCCCCGGCGGCGGCGCCTGGCTCGGCGGCCAACTCTTCTCTGCCATG GTAGTGCGTAAGCCCGCACACCTCTTCCTAGACGAGCTTGGTCTTGAGTAT
genomic: TCAGCCCCGGCGGCGGCGCCTGGCTCGGCGGCCAACTCTTCTCTGCCATGgtcggtaact ... gcaagtgcagGTAGTGCGTAAGCCCGCACACCTCTTCCTAGACGAGCTTGGTCTTGAGTAT
EST:
gi|11687721|gb|BF595397.1|BF595397EST: TCAGCCCCGGCGGCGGCGCCTGGCTCGGCGGCCAACTCTTCTCTGCCATG GTAGTGCGTAAGCCCGCACACCTCTTCCTAGACGAGCTTGGTCTTGAGTAT
genomic: TCAGCCCCGGCGGCGGCGCCTGGCTCGGCGGCCAACTCTTCTCTGCCATGgtcggtaact ... gcaagtgcagGTAGTGCGTAAGCCCGCACACCTCTTCCTAGACGAGCTTGGTCTTGAGTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attaatttgatgacacaagatcatctaatggtgtatgatgattgtgcaagtgcagGTAGTGCGTAAGCCCGCACACCTCTTCCTAGACGAGCTTGGTCTTGAGTATGACGAACAAGACAACTACGTGGTGATCAAGCACGCTGCATTGTTCACTT
atctaat putative branch site (score: 3)
atctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaacaaataatgaagaatgcgatcgaatgtgaagatacatgaataattaatttgatgacacaagatcatctaatggtgtatgatgattgtgcaagtgcagGTAGTGCGTAAGCCCGCACACCTCTTCCTAGACGAGCTTGGTCTTGAGTATGACGAACAAGACAACTACGTGGTGATCAAGCACGCTGCATTGTTCACTT
aaacaaa
- - - - - - - gaatgcg
- - - - - - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - tgatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga