Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtttgtttctttttgatcttttttgttcttcttttgttgataagcttttttatttggatggtttgaattgtgattgttcaattgttgttgttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC

Basic information

species Glycine max
transcript GLYMA12G15420.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G15420.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G58680.1 (Arabidopsis thaliana), 3'ss of exon 1
tgtttgtttctttttgatcttttttgttcttcttttgt-tgataagcttttttatttggatggtt--tgaattgtgattgttcaattgttgttgttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC
  ||  |||   |   ||||  ||||||||   |  || |    || | ||  |  |       |   ||  | || |  ||   || ||| ||  | |  ||  ||||||||  | || || || ||||| ||| |||| || |||||||| |||| ||| |||||||||||||||||  || |||
-tttctttttcgtgaaatctcctttgttctatatgagtatttctagttgttgcaagtaatcatctaacgagatttgttgtttttgttattgctg--ggtttagTCAATGCTGGATCGAACAAGGCTGCATCAAGCGGCACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC

upper sequence: GLYMA12G15420.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv12s0028g02020.t01 (Vitis vinifera), 3'ss of exon 1
tgtttgtttctttttgatcttttttgttcttcttttgttgataagcttttttatttggatggtttgaattgtgattgtt-caattgttgttgt-tgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC
  ||   |  ||||| ||   | ||  |  |||| || |  |      |||||| |       |||||     ||| |   | || |||   | | ||  || | ||||||||||||| ||||| || ||||||||||| || || ||||| | || ||| ||||| || || |||||||| ||||
aattatatgatttttaataggtctt--taatcttgtgatcttgtttcattttatcttagatccttgaacatccattctgatagttcttgccatctcttgtagCTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664422|gb|BI701793.1|BI701793
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|10847759|gb|BF070395.1|BF070395
EST:     CTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         CTAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|298163995|gb|HO013640.1|HO013640
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|298193081|gb|HO033515.1|HO033515
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|120495398|gb|EH223565.1|EH223565
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|120495990|gb|EH224157.1|EH224157
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|6725295|gb|AW309694.1|AW309694
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|298198641|gb|HO040180.1|HO040180
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|7924816|gb|AW830842.1|AW830842
EST:     GTCAACGCCGCCCGGCGCTCCGGCGCGGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGGACAAATAAAGCAGCAT
genomic: GTCAACGCCGCCCGGCGCTCCGGCGCGG-AAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGG-ACAAATAAAGCAGCAT
EST: gi|10235229|gb|BE804176.1|BE804176
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|10235977|gb|BE804865.1|BE804865
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|4285923|gb|AI440973.1|AI440973
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|10844320|gb|BF067629.1|BF067629
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|23730351|gb|BU763268.1|BU763268
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|120495988|gb|EH224155.1|EH224155
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|120495264|gb|EH223431.1|EH223431
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|48575159|gb|CO036264.1|CO036264
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|31463062|gb|CD405090.1|CD405090
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|7685112|gb|AW755760.1|AW755760
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|27809265|gb|CB063687.1|CB063687
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|19346115|gb|BM890995.1|BM890995
EST:     GTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: GTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|4294112|gb|AI442144.1|AI442144
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTG
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTG
EST: gi|209716104|gb|BW668643.1|BW668643
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|31310981|gb|CD396184.1|CD396184
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGTATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|26269232|gb|CA820295.1|CA820295
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|254331088|gb|GR842353.1|GR842353
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|31459179|gb|CD401207.1|CD401207
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|21887676|gb|BQ740889.1|BQ740889
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|15000360|gb|BI321174.1|BI321174
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|17023283|gb|BM094317.1|BM094317
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|12773120|gb|BG238047.1|BG238047
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|33389507|gb|CA852714.1|CA852714
EST:     CGTCAACGCCGCCTGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTG
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|7028127|gb|AW457910.1|AW457910
EST:     GTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: GTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|7146182|gb|AW508167.1|AW508167
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|298168480|gb|HO009410.1|HO009410
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACC-TAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|11687714|gb|BF595390.1|BF595390
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|10845945|gb|BF068955.1|BF068955
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|27446138|gb|CA953261.1|CA953261
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|193345969|gb|FK310455.1|FK310455
EST:     CGGC-CGGGAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|208320476|gb|GE122477.1|GE122477
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACGAAATAAAGACAGCATCTAGCAGCACTTCATTGAA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGAC-AAATAAAG-CAGCATCTAGCAGCACTTCATTGAA
EST: gi|11688441|gb|BF596117.1|BF596117
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|7692167|gb|AW760281.1|AW760281
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|11688433|gb|BF596109.1|BF596109
EST:     GTCAACGCCGCCCGGCGCTTCCG-CGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: GTCAACGCCGCCCGGCGCT-CCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|298183608|gb|HO028821.1|HO028821
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|7691241|gb|AW759372.1|AW759372
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|254336558|gb|GR842737.1|GR842737
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|27446370|gb|CA953493.1|CA953493
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|298179952|gb|HO025167.1|HO025167
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|151400091|gb|EV269905.1|EV269905
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|254326155|gb|GR840747.1|GR840747
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|298167378|gb|HO012641.1|HO012641
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|14259931|gb|BG882839.1|BG882839
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|6482446|gb|AW201705.1|AW201705
EST:     AACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: AACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|6069595|gb|AW099256.1|AW099256
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|21256329|gb|BQ453217.1|BQ453217
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|9440041|gb|BE440552.1|BE440552
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|298163845|gb|HO012578.1|HO012578
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|298183640|gb|HO028853.1|HO028853
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAA-GT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|10846727|gb|BF071410.1|BF071410
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAANAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|23730590|gb|BU763381.1|BU763381
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|14012141|gb|BG727063.1|BG727063
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|11274236|gb|BF324604.1|BF324604
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|19453675|gb|BM955085.1|BM955085
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: gi|19348136|gb|BM892668.1|BM892668
EST:     CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTgttcgttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttatttggatggtttgaattgtgattgttcaattgttgttgttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC
                 tttgaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtttgtttctttttgatcttttttgttcttcttttgttgataagcttttttatttggatggtttgaattgtgattgttcaattgttgttgttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
tgtttgt
- - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt