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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccctcacctcttcaattttccttttcttacgccctcttcagatttatgttttttttaaatgttattcgttcatttttttttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTGTAACCGAAGCTCGTGCCCTTTGGCTAATAGTCGCTATGCCACCATTCGC

Basic information

species Glycine max
transcript GLYMA12G14000.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406980|gb|EV276795.1|EV276795
EST:     GAGGTCATATGGCAAGTTATCAGGCTCAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagttccc ... ttttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|18041381|gb|BM309675.1|BM309675
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagttccc ... ttttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|17518730|gb|BM187772.1|BM187772
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagttccc ... ttttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|298164306|gb|HO013951.1|HO013951
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagttccc ... ttttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcttcagatttatgttttttttaaatgttattcgttcatttttttttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTGTAACCGAAGCTCGTGCCCTTTGGCTAATAGTCGCTATGCCACCATTCGC
                             ttattcgttcattttt  CT-rich tract
 atttatgtttttttta  TA-rich tract