1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgatcaatgggaaattctgtgtggttagtataatacaagcaaaatgatatagcagaatgatgatgatgaatctttgacactttgactggatttatttcagTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATCACTTGCTGGAGCATAGAGCTTCAGAATG
species | Glycine max |
transcript | GLYMA12G12960.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGAT TATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATEST: gi|192300166|gb|FG989288.1|FG989288
genomic: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGATgtaatgtctc ... tttatttcagTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTAT
EST: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGAT TATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATEST: gi|17400249|gb|BM177040.1|BM177040
genomic: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGATgtaatgtctc ... tttatttcagTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTAT
EST: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGAT TATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATEST: gi|11412465|gb|BF424476.1|BF424476
genomic: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGATgtaatgtctc ... tttatttcagTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTAT
EST: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGAT TATCACATAGGAAGAGGTCAATATTGGAGCAACTTATGAAAGCEST: gi|192331203|gb|FK020956.1|FK020956
genomic: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGATgtaatgtctc ... tttatttcagTATCACATAGGAAGAGGTCA-TATTGGAGCAACT-ATGAAAGC
EST: ACAGA-TGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGAT TATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATEST: gi|8827322|gb|BE211052.1|BE211052
genomic: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGATgtaatgtctc ... tttatttcagTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTAT
EST: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGAT TATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATEST: gi|298179061|gb|HO024796.1|HO024796
genomic: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGATgtaatgtctc ... tttatttcagTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTAT
EST: ACAGATTGAAAGATCGGTATCCTGAAGACATCGCTTCTGTTTGGGATGAT TATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATEST: gi|254320768|gb|GR827217.1|GR827217
genomic: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGATgtaatgtctc ... tttatttcagTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTAT
EST: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGAT TATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATEST: gi|254320769|gb|GR827218.1|GR827218
genomic: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGATgtaatgtctc ... tttatttcagTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTAT
EST: ACATTGCTTCTGTTTGGGATGAT TATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATEST: gi|19453517|gb|BM954927.1|BM954927
genomic: ACATTGCTTCTGTTTGGGATGATgtaatgtctc ... tttatttcagTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTAT
EST: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGAT TATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTAT
genomic: ACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGATgtaatgtctc ... tttatttcagTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTAT
gatatagcagaatgatgatgatgaatctttgacactttgactggatttatttcagTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATCACTTGCTGGAGCATAGAGCTTCAGAATG
ctttgac putative branch site (score: 4)
tttatttc putative PPT
atttatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatcaatgggaaattctgtgtggttagtataatacaagcaaaatgatatagcagaatgatgatgatgaatctttgacactttgactggatttatttcagTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATCACTTGCTGGAGCATAGAGCTTCAGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - -tacaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgactg