1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tcagatatgccacctcacatatgctgagttctttttgtcttgcttatttgattattattctaagaaccaaaacatttaacatttttattaataatattagGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTGCATTTTATACTACT
species | Glycine max |
transcript | GLYMA12G11820.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCG GATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTEST: gi|213599371|gb|DB970347.1|DB970347
genomic: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGgttagtcttc ... ataatattagGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGT
EST: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCG GATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTEST: gi|298174331|gb|HO017667.1|HO017667
genomic: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGgttagtcttc ... ataatattagGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGT
EST: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCG GATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCGAGTTATAGTGGAGGTEST: gi|208130851|gb|GD932404.1|GD932404
genomic: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGgttagtcttc ... ataatattagGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGT
EST: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCG GATGGAACAGCTAAAGGAAAAGGGTCAGGGEST: gi|15813443|gb|BI785718.1|BI785718
genomic: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGgttagtcttc ... ataatattagGATGGAACAGCTAAAGGAAAAGGGTCAGGG
EST: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCG GATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTEST: gi|7924737|gb|AW830763.1|AW830763
genomic: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGgttagtcttc ... ataatattagGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGT
EST: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCG GATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTEST: gi|13787288|gb|BG649880.1|BG649880
genomic: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGgttagtcttc ... ataatattagGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGT
EST: ACGATCCC-TTCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCG GATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGT
genomic: ACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGgttagtcttc ... ataatattagGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGT
atttgattattattctaagaaccaaaacatttaacatttttattaataatattagGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTGCATTTTATACTACT
tattaat putative branch site (score: 2)
taagaaccaaaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagatatgccacctcacatatgctgagttctttttgtcttgcttatttgattattattctaagaaccaaaacatttaacatttttattaataatattagGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTGCATTTTATACTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - -ccacctc
- - - - - - - - - -tatgctg
- - - - - - - - - - - - - - - - - - - cttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaaac