Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298182684|gb|HO031419.1|HO031419EST: CACCGACCAAGTCCTCATGTCCAAGCACATGCTCGAAGCTTCTCTCATGG GGTTTCTGCTGCTCCTCTCTCTGATGATTGATAGATTGCACCATTACATAA
genomic: CACCGACCAAGTCCTCATGTCCAAGCACATGCTCGAAGCTTCTCTCATGGgtatctctca ... atgtgtgcagGGTTTCTGCTGTTCCTCTCTCTGATGATTGATAGATTGCACCATTACATAA
EST:
gi|298190713|gb|HO032834.1|HO032834EST: CACCGACCAAGTCCTCATGTC-AAGCACATGCTCGGAGCTTCTCTCATGG GGTTTCTGCTGTTCCTCTCTCTGATGATTGATAGATTGCACCATTACATAA
genomic: CACCGACCAAGTCCTCATGTCCAAGCACATGCTCGAAGCTTCTCTCATGGgtatctctca ... atgtgtgcagGGTTTCTGCTGTTCCTCTCTCTGATGATTGATAGATTGCACCATTACATAA
EST:
gi|16996431|gb|BM085803.1|BM085803EST: CACCGACCAAGTCCTCATGTCCAAGCACATGCTCGAAGCTTCTCTCATGG GGTTTCTGCTGTTCCTCTCTCTGATGATTGATAGATTGCACCATTACATAA
genomic: CACCGACCAAGTCCTCATGTCCAAGCACATGCTCGAAGCTTCTCTCATGGgtatctctca ... atgtgtgcagGGTTTCTGCTGTTCCTCTCTCTGATGATTGATAGATTGCACCATTACATAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatagatatattatttagtttttgaacttgatcttttgcatctaatgtgtgcagGGTTTCTGCTGTTCCTCTCTCTGATGATTGATAGATTGCACCATTACATAAGAGAGCTTCGGTCACTCAGGAAGACCATGGAAGCTATTAAGAAACAAAG
atatattatttagttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgtgagttggatatttctttacttattgtagtttttttttcctattaatagatatattatttagtttttgaacttgatcttttgcatctaatgtgtgcagGGTTTCTGCTGTTCCTCTCTCTGATGATTGATAGATTGCACCATTACATAAGAGAGCTTCGGTCACTCAGGAAGACCATGGAAGCTATTAAGAAACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA