1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttctagttttttttgtatatatttgtaaaaaattaatgataattgtatatatctttcagctcttgtatttgttatttatttgaaaatggggtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCCAATTTGTTATCAGTTAACATGGGAGCTTCACTTCAAGCAT
species | Glycine max |
transcript | GLYMA12G10210.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTCACTGCAACTTCTGCAACACCATTCTAGCG GTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGAEST: gi|298183030|gb|HO028293.1|HO028293
genomic: GTTCACTGCAACTTCTGCAACACCATTCTAGCGgtacaacact ... gtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGA
EST: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCG GTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGAEST: gi|213618025|gb|DB963658.1|DB963658
genomic: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGgtacaacact ... gtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGA
EST: GTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCG GTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGAEST: gi|23064258|gb|BU579031.1|BU579031
genomic: GTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGgtacaacact ... gtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGA
EST: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCG GTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGAEST: gi|298182663|gb|HO031398.1|HO031398
genomic: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGgtacaacact ... gtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGA
EST: CGGAACGTGTTTGTTACGTTCACTGCAACTTCTGCAACACCATTCTAGCG GTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGAEST: gi|192316108|gb|FK007169.1|FK007169
genomic: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGgtacaacact ... gtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGA
EST: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCG GTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGAEST: gi|192305211|gb|FG993963.1|FG993963
genomic: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGgtacaacact ... gtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGA
EST: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCG GTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGAEST: gi|27425967|gb|CA937487.1|CA937487
genomic: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGgtacaacact ... gtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGA
EST: ACCATTCTAGCG GTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGAEST: gi|298193194|gb|HO033628.1|HO033628
genomic: ACCATTCTAGCGgtacaacact ... gtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGA
EST: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCG GTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGAEST: gi|192299092|gb|FG990406.1|FG990406
genomic: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGgtacaacact ... gtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGA
EST: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCG GTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGA
genomic: CGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGgtacaacact ... gtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGA
tatatatctttcagctcttgtatttgttatttatttgaaaatggggtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCCAATTTGTTATCAGTTAACATGGGAGCTTCACTTCAAGCAT
tcttgtatttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctagttttttttgtatatatttgtaaaaaattaatgataattgtatatatctttcagctcttgtatttgttatttatttgaaaatggggtattggcagGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCCAATTTGTTATCAGTTAACATGGGAGCTTCACTTCAAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT