1 5' 3' | 2 5' 3' | 3 5' 3' |
...aagtgttcggaatatgtggaattgagctctgattttagcctacctttgttcttaattaatgtaaaattaaccttgcgattcgttatgttatttacagaagAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTACGGATCTAGAAGGCTATTTAGCAGTGGTTCTGGAAAAATACTGAGCGAGGA
species | Glycine max |
transcript | GLYMA12G09600.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCACTGAACTGAGTCTGAAGEST: gi|33388268|gb|CA851475.1|CA851475
genomic: CTCCACTGAACTGAGTCT---Ggtaatttatt ... tttacaga
EST: CATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGANCTGAGNNTGAAG AGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTACEST: gi|151411066|gb|EV280877.1|EV280877
genomic: CATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAG--T-CTGgtaatttatt ... tttacagaagAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTAC
EST: CATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACCGAGTCTGAAG AGGGAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTACEST: gi|151398999|gb|EV268870.1|EV268870
genomic: CATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCT---Ggtaatttatt ... tttacagaagAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTAC
EST: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGAAGEST: gi|10253437|gb|BE821203.1|BE821203
genomic: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCT---Ggtaatttatt ... tttacaga
EST: CTCCACTGAACTGAGNCTGAAG AGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTACEST: gi|192301404|gb|FG998396.1|FG998396
genomic: CTCCACTGAACTGAGTCT---Ggtaatttatt ... tttacagaagAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTAC
EST: ACACATTGCTTCTGCTAACCCTCTCTGGGTTCTCCACTGAACTGAGTCTGAAGEST: gi|151412650|gb|EV282462.1|EV282462
genomic: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCT---Ggtaatttatt ... tttacaga
EST: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTG AGGAAAACATTTAACTAACTGCAATAGCTGCACGTGTGGCTGCAAGGTACGEST: gi|16346323|gb|BI971918.1|BI971918
genomic: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGgtaatttatt ... tttacagaagAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTACG
EST: CCCTCTCTGGGCTCTCCACTGAACTGAGTCTGAAGEST: gi|192326512|gb|FK018819.1|FK018819
genomic: CCCTCTCTGGGCTCTCCACTGAACTGAGTCT---Ggtaatttatt ... tttacaga
EST: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGAAG
genomic: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCT---Ggtaatttatt ... tttacaga
ttgttcttaattaatgtaaaattaaccttgcgattcgttatgttatttacagaagAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTACGGATCTAGAAGGCTATTTAGCAGTGGTTCTGGAAAAATACTGAGCGAGGA
aattaac putative branch site (score: 2)
ttaattaatgtaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgttcggaatatgtggaattgagctctgattttagcctacctttgttcttaattaatgtaaaattaaccttgcgattcgttatgttatttacagaagAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTACGGATCTAGAAGGCTATTTAGCAGTGGTTCTGGAAAAATACTGAGCGAGGA
-agtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accttgc