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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgcagatctgtgtctggtgctggcaccacataatggacatggctgagaaggatgacactgaggggcgatgccctgcatgtcgttctccttatgataagGAAAAGATTGTTGGGACGGCTGCAAACT

Basic information

species Glycine max
transcript GLYMA12G07790.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07790.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os12g01190.3 (Oryza sativa), 3'ss of exon 2
----------------------------------------------------------------------attgcagatctgtgtctggtgctggcaccacataatggacatggctgagaaggatgacactgaggggcgatgccctgcatgtcgttctccttatgataagGAAAAGATTGTTGGGACGGCTGCAAACT
                                                                      | ||||||| ||||||||||||||||||||||| || || ||||||||||| || ||||||||||| || ||||| ||||| ||  |||  ||||| || || | ||                     
gtttcttcccttccctccccaccactctactctccacaccccccttccattcacctcccttttgcatctcactgcagATTTGTGTCTGGTGCTGGCACCACATCATTGATATGGCTGAGAAAGAGGACACTGAGGGCCGCTGCCCCGCATGCCGCACTCGCTATGACAAAGATAGGA---------------------

upper sequence: GLYMA12G07790.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os11g01190.1 (Oryza sativa), 3'ss of exon 2
--------------------------------------------------------------------------------attgcagatctgtgtctggtgctggcaccacataatggacatggctgagaaggatgacactgaggggcgatgccctgcatgtcgttctccttatgataagGAAAAGATTGTTGGGACGGCTGCAAACT
                                                                                | ||||||| ||||||||||||||||||||||| || || ||||||||||| || ||||||||||| || ||||| ||||| ||  |||  ||||| || || | ||                     
gtttcttcccttcccttccctcccctccccaccactctactctccacacccccttccattcacctcccttttgcatctccactgcagATTTGTGTCTGGTGCTGGCACCACATCATTGATATGGCTGAGAAAGAGGACACTGAGGGCCGCTGCCCCGCATGCCGCACTCGCTATGACAAAGATAGGA---------------------

upper sequence: GLYMA12G07790.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G146267_T02 (Zea mays), 3'ss of exon 2
-------------------------------------------------------------------------------------------------attgcagatctgtgtctggtgctggcaccacataatggacatggctgagaaggatgacactgaggggcgatgccctgcatgtcgttctccttatgataagGAAAAGATTGTTGGGACGGCTGCAAACT
                                                                                                   ||||||| ||||| ||||||||||||||||| || ||||||||||||||||| || || | ||| || ||||||||||| ||  |    ||||| ||||| | ||                     
gtatgtctactgattctcctatcctattgtaccaatcagattgcagcccaccttgtctgcactttgtttcatcatataacaagaactgtcacttaactctgcagATTTGTGTTTGGTGCTGGCACCACATCATAGACATGGCTGAGAAGGAGGAAACAGTGGGCCGCTGCCCTGCATGCCGCACATGCTATGACAAGGACAGGA---------------------

upper sequence: GLYMA12G07790.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G400238_T02 (Zea mays), 3'ss of exon 1
---------------------------------------------------------------------------------------------attgcagatctgtgtctggtgctggcaccacataatggacatggctgagaaggatgacactgaggggcgatgccctgcatgtcgttctccttatgataagGAAAAGATTGTTGGGACGGCTGCAAACT
                                                                                               ||||||| ||||| ||||||||||||||||| || ||||||||||||||||| || || | ||| || ||||||||||| ||  |    ||||| ||||| | ||                     
gtatgtctactgatcttcttcctatcctatcaatcatattgcagcctgccttgcatgcactttgtgccatcatctaacaataactgccataactctgcagATTTGTGTTTGGTGCTGGCACCACATCATAGACATGGCTGAGAAGGAGGAAACAGTGGGCCGCTGCCCTGCATGCCGCACATGCTATGACAAGGACAGGA---------------------

upper sequence: GLYMA12G07790.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM5G848541_T02 (Zea mays), 3'ss of exon 7
--------------------------------------------------------------attgcagatctgtgtctggtgctggcaccacataatggacatggctgagaaggatgacactgaggggcgatgccctgcatgtcgttctccttatgataagGAAAAGATTGTTGGGACGGCTGCAAACT-------
                                                              |   ||||| ||||| | || |||||||||||| || ||||||||||||||||| || ||  |||| || |||||||| || |   | | |||||| ||||| | ||| ||   || ||| || |  |       
gatcaattagattgcagcctgccttgcatgcactgtgcgccatcatcaaataactgctacttaactcagatttgtgtttcgtactggcaccacatcatagACATGGCTGAGAAGGAGGAAACAAAGGGCCGCTGCCCTGCCTGCCACACACGTTATGACAAGGATATGATCGTCAAGATGGCCGCCACTTGTGACAG

upper sequence: GLYMA12G07790.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g03580.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------------------------------------------------------------------------attgcagatctgtgtctggtgctggcaccacataatggacatggctgagaaggatgacactgaggggcgatgccctgcatgtcgttctccttatgataagGAAAAGATTGTTGGGACGGCTGCAAACT
                                                                                              || ||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||| || ||||| || ||||||||||| |||   |||||| | || |||||||                     
tattgaaccatttgtatctgatttcatcccttattcatcaactggaaagccttaaaattgtttccactccatttgtaattctgcttgtgtgtctttacagATATGTGTTTGGTGCTGGCATCACATAATGAACATGGCTGAGAAGGATGAAACAGAGGGTCGGTGCCCTGCATGCCGTGTCCCTTATAACAAAGAAAAGA---------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagaaggatgacactgaggggcgatgccctgcatgtcgttctccttatgataagGAAAAGATTGTTGGGACGGCTGCAAACT
                                    tcgttctcctt  CT-rich tract
                                             ttatgataa  TA-rich tract