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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtggatatgttaatctgttagctagtgcttgagtgtttattgtttaacgtttacttttttttttttgagaaatctgaatatgttgatgtgctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGCGAACGCTTTCGACAATCACATGGACGCTAAGCGTACGCTTCGTGAGATT

Basic information

species Glycine max
transcript GLYMA12G07770.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714971|gb|BW650817.1|BW650817
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|192315258|gb|FK009606.1|FK009606
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|254338777|gb|GR847494.1|GR847494
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|23734544|gb|BU765510.1|BU765510
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|6567222|gb|AW234833.1|AW234833
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|7590950|gb|AW706693.1|AW706693
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|6666996|gb|AW278455.1|AW278455
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|16346173|gb|BI971768.1|BI971768
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCTTTTG                         TTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|105633120|gb|DW246633.1|DW246633
EST:     ACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: ACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|192304508|gb|FG996774.1|FG996774
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|213591425|gb|DB959911.1|DB959911
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|24205687|gb|BU964940.1|BU964940
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|9565343|gb|BE474852.1|BE474852
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|21889903|gb|BQ743116.1|BQ743116
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|209726888|gb|BW675328.1|BW675328
EST:     TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
genomic: TACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGC
EST: gi|16106079|gb|BI893819.1|BI893819
EST:     ACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACTTTTATCTTTTG                         CTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAG
genomic: ACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGA-ATCGTTTGgtactgattc ... ctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgtttacttttttttttttgagaaatctgaatatgttgatgtgctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGCGAACGCTTTCGACAATCACATGGACGCTAAGCGTACGCTTCGTGAGATT
                                           tgcttttt  CT-rich tract
         ttttttttttttgaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtggatatgttaatctgttagctagtgcttgagtgtttattgtttaacgtttacttttttttttttgagaaatctgaatatgttgatgtgctttttgaagCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGCGAACGCTTTCGACAATCACATGGACGCTAAGCGTACGCTTCGTGAGATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - ctgttag
- - - - - - - - - - -ctagtgc
- - - - - - - - - - - - - - -tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgatg