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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactattttactaataactttaactccctctcactctcctccatgtttttctttttctctctctaattgattcatgctctttgatggtgtagGATGGCAGATCATGAGCGTAGGAGGAAGGCCATGAAGAGGCAAAGAGGTGCTATGCACACAAATCAACAAAAGGGTATCCACAGAAACAACTTTGAAAGT

Basic information

species Glycine max
transcript GLYMA12G07610.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494561|gb|EH222728.1|EH222728
EST:     CTTCCACTTTGTCTCTCTGGAATTACTCACCCTCTTGCTCTCCCTAAAGA                         GATGGCAGATCATGAGCGTAGGAGGAAGGCCATGAAGAGGCAAAGAGGTGC
genomic: CTTCCACTTTGTCTCTCTGGAATTACTCACCCTCTTGCTCTCCCTAAAGAgtacactatt ... gatggtgtagGATGGCAGATCATGAGCGTAGGAGGAAGGCCATGAAGAGGCAAAGAGGTGC
EST: gi|151403631|gb|EV273441.1|EV273441
EST:     CTTCCACTTTGTCTCTCTGGAATTACTCACCCTCTTGCTCTCCCTAAAGA                         GATGGCAGATCATGAGCGTAGGAGGAAGGCCATGAAGAGGCAAAGAGGTGC
genomic: CTTCCACTTTGTCTCTCTGGAATTACTCACCCTCTTGCTCTCCCTAAAGAgtacactatt ... gatggtgtagGATGGCAGATCATGAGCGTAGGAGGAAGGCCATGAAGAGGCAAAGAGGTGC
EST: gi|6914591|gb|AW396121.1|AW396121
EST:     CTTCCACTTTGTCTCTCTGGAATTACTCACCCTCTTGCTCTCCCTAAAGA                         GATGGCAGATCATGAGCGTAGGAGGAAGGCCATGAAGAGGCAAAGAGGTGC
genomic: CTTCCACTTTGTCTCTCTGGAATTACTCACCCTCTTGCTCTCCCTAAAGAgtacactatt ... gatggtgtagGATGGCAGATCATGAGCGTAGGAGGAAGGCCATGAAGAGGCAAAGAGGTGC
EST: gi|10252807|gb|BE820573.1|BE820573
EST:     CTTCCACTTTGTCTCTCTGGAATTACTCACCCTCTTGCTCTCCCTAAAGA                         GATGGCAGATCATGAGCGTAGGAGGAAGGCCATGAAGAGGCAAAGAGGTGC
genomic: CTTCCACTTTGTCTCTCTGGAATTACTCACCCTCTTGCTCTCCCTAAAGAgtacactatt ... gatggtgtagGATGGCAGATCATGAGCGTAGGAGGAAGGCCATGAAGAGGCAAAGAGGTGC
EST: gi|208087880|gb|GD890280.1|GD890280
EST:     CTTCCACTTTGTCTCTCTGGAATTACTCACCCTCTTGCTCTCCCTAAAGA                         GATGGCAGATCATGAGCGTAGGAGGAAGGCCATGAAGAGGCAAAGAGGTGC
genomic: CTTCCACTTTGTCTCTCTGGAATTACTCACCCTCTTGCTCTCCCTAAAGAgtacactatt ... gatggtgtagGATGGCAGATCATGAGCGTAGGAGGAAGGCCATGAAGAGGCAAAGAGGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctccatgtttttctttttctctctctaattgattcatgctctttgatggtgtagGATGGCAGATCATGAGCGTAGGAGGAAGGCCATGAAGAGGCAAAGAGGTGCTATGCACACAAATCAACAAAAGGGTATCCACAGAAACAACTTTGAAAGT
                                       ctctttg  CT-rich tract
 atgtttttcttttt  TA-rich tract