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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcaactcattcccttccatcgatcattcaccgttccattttcaattcgctctgttccataattcgcttctctctctctcctctttttttttttttttttaattagACCGAGTGCTGTTGGGGTCAGCATGCGCTAGCTTCGTCGTCGATTTTTTGGTTGGTGATTCTCGTGATTCTTTTCGGGCAGAATTTTTGGGTTTGACGGC

Basic information

species Glycine max
transcript GLYMA12G07590.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532141|gb|EH260274.1|EH260274
EST:     GTGAACCCCCAAACCCTAATCGCCACCACCTCCAATCCTTCGTTTCTATG                         ACCGAGTGCTGTTGGGGTCAGCATGCGCTAGCTTCGTCGTCGATTTTTTGG
genomic: GTGAACCCCCAAACCCTAATCGCCACCACCTCCAATCCTTCGTTTCTATGgtagcaactc ... ttttaattagACCGAGTGCTGTTGGGGTCAGCATGCGCTAGCTTCGTCGTCGATTTTTTGG
EST: gi|209727434|gb|BW663720.1|BW663720
EST:     GTGAACCCCCAAACCCTAATCGCCACCACCTCCAATCCTTCGTTTCTATG                         ACCGAGTGCTGTTGGGGTCAGCATGCGCTAGCTTCGTCGTCGATTTTTTGG
genomic: GTGAACCCCCAAACCCTAATCGCCACCACCTCCAATCCTTCGTTTCTATGgtagcaactc ... ttttaattagACCGAGTGCTGTTGGGGTCAGCATGCGCTAGCTTCGTCGTCGATTTTTTGG
EST: gi|209696512|gb|BW666889.1|BW666889
EST:     GTGAACCCCCAAACCCTAATCGCCACCACCTCCAATCCTTCGTTTCTATG                         ACCGAGTGCTGTTGGGGTCAGCATGCGCTAGCTTCGTCGTCGATTTTTTGG
genomic: GTGAACCCCCAAACCCTAATCGCCACCACCTCCAATCCTTCGTTTCTATGgtagcaactc ... ttttaattagACCGAGTGCTGTTGGGGTCAGCATGCGCTAGCTTCGTCGTCGATTTTTTGG
EST: gi|209719159|gb|BW679752.1|BW679752
EST:     GTGAACCCCCAAACCCTAATCGCCACCACCTCCAATCCTTCGTTTCTATG                         ACCGAGTGCTGTTGGGGTCAGCATGCGCTAGCTTCGTCGTCGATTTTTTGG
genomic: GTGAACCCCCAAACCCTAATCGCCACCACCTCCAATCCTTCGTTTCTATGgtagcaactc ... ttttaattagACCGAGTGCTGTTGGGGTCAGCATGCGCTAGCTTCGTCGTCGATTTTTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttccataattcgcttctctctctctcctctttttttttttttttttaattagACCGAGTGCTGTTGGGGTCAGCATGCGCTAGCTTCGTCGTCGATTTTTTGGTTGGTGATTCTCGTGATTCTTTTCGGGCAGAATTTTTGGGTTTGACGGC
           ttcgcttctctctctc  CT-rich tract
                         tctcctcttttttttt  TA-rich tract