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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcgtgttcctcactttaaacaattagttgaacaaaattaaaattcagtggttattttttcaatagtattggaattcagcatgtttaggaagaacattgtgtaattagggagaagactatgttgtgtgaaaaattaggttggtattggtttttgccgtgtgtgacttgagttagagtttttttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAGTTAAGTCAGGTGCTACCTTTAAGAAGAAGGTAAAGAAGATCCGAACTTC

Basic information

species Glycine max
transcript GLYMA12G07160.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298189111|gb|HO037514.1|HO037514
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192334787|gb|FK025278.1|FK025278
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAGGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192325956|gb|FK016633.1|FK016633
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298171333|gb|HO016365.1|HO016365
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|6846652|gb|AW348942.1|AW348942
EST:     TAGGAATATNCGACAGGTAGAGTTTTTTCAATGGCNNNNAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCANNNNNNGAAGACTGCTAAGGCAG
genomic: TAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|9986846|gb|BE660954.1|BE660954
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|31459892|gb|CD401920.1|CD401920
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCTAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|4405507|gb|AI507656.1|AI507656
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298179669|gb|HO024884.1|HO024884
EST:     CAGGGATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCTTAAAG                         TTGATAAGAGGAATGATCCAACGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298169507|gb|HO020867.1|HO020867
EST:     GGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298185070|gb|HO030283.1|HO030283
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|15662575|gb|BI699946.1|BI699946
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298199222|gb|HO042585.1|HO042585
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192304386|gb|FG997828.1|FG997828
EST:     GTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|213620283|gb|DB961428.1|DB961428
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|7589639|gb|AW705409.1|AW705409
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|5677357|gb|AI938487.1|AI938487
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298171197|gb|HO016229.1|HO016229
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAGGAATGATCCAAAGG-CCAGGCCTTGAAGGCTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|213607106|gb|DB965076.1|DB965076
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298182573|gb|HO031308.1|HO031308
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298175473|gb|HO015106.1|HO015106
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192333770|gb|FK025493.1|FK025493
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGGTCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|27425020|gb|CA936540.1|CA936540
EST:     GGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|7588678|gb|AW704468.1|AW704468
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192322634|gb|FK014371.1|FK014371
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|31456055|gb|CD398083.1|CD398083
EST:     ATATTCGACAGCTAGAGTTTCTTCAATGGCTCCTAAAC                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: ATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192309839|gb|FK002951.1|FK002951
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|298185275|gb|HO030488.1|HO030488
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|15204245|gb|BI427013.1|BI427013
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|192298569|gb|FG989230.1|FG989230
EST:     CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: CAGGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
EST: gi|15814133|gb|BI786408.1|BI786408
EST:     GAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG                         TTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG
genomic: GAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGgtatgttcgt ... ttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttggtattggtttttgccgtgtgtgacttgagttagagtttttttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAGTTAAGTCAGGTGCTACCTTTAAGAAGAAGGTAAAGAAGATCCGAACTTC
                                        tttttttgt  CT-rich tract
                                      agttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttcgtgttcctcactttaaacaattagttgaacaaaattaaaattcagtggttattttttcaatagtattggaattcagcatgtttaggaagaacattgtgtaattagggagaagactatgttgtgtgaaaaattaggttggtattggtttttgccgtgtgtgacttgagttagagtttttttgtgtgcagTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAGTTAAGTCAGGTGCTACCTTTAAGAAGAAGGTAAAGAAGATCCGAACTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG