Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208216650|gb|GE012554.1|GE012554EST: ATTCGCAGTCACCGGAGCTCTAATCACCAAACTTTCC-TTGGCCTTACCG AGGAAGATGCTAAGAATTCC
genomic: ATTCGCAGTCACCGGAGCTCTAATCACCAAACTTTCCCTTGGCCTTACCGgtaaaaccac ... tttttggcagAGGAAGATGCTAAGAATTCC
EST:
gi|193508888|gb|FK465484.1|FK465484EST: ATTCGCAGTCACCGGAGCTCTAATCACCAAACTTTCCCTTGGCCTTACCG AGGAAGATGCTAAGAATTCCAAATTCGTTAAGGCGCACAAAAG-GTGAA
genomic: ATTCGCAGTCACCGGAGCTCTAATCACCAAACTTTCCCTTGGCCTTACCGgtaaaaccac ... tttttggcagAGGAAGATGCTAAGAATTCCAAATTCGTTAAGGCGCACAAAAGAGTGAA
EST:
gi|8403677|gb|BE059373.1|BE059373EST: ATTCGCAGTCACCGGAGCTCTAATCACCAAACTTTCCCTTGGCCTTACCG AGGAAGATGCTAAGAATTCCAAATTCGTTAAGGCGCACAAAAG
genomic: ATTCGCAGTCACCGGAGCTCTAATCACCAAACTTTCCCTTGGCCTTACCGgtaaaaccac ... tttttggcagAGGAAGATGCTAAGAATTCCAAATTCGTTAAGGCGCACAAAAG
EST:
gi|193353216|gb|FK316016.1|FK316016EST: ATTCGCAGTCACCGGAGCTCTAATCACCAAACTTTCCCTTGGCCTTACCG AGGAAGATGCTAAGAAATTCCAAATTCGTTAAGGCGCACAAAAG-GTGA
genomic: ATTCGCAGTCACCGGAGCTCTAATCACCAAACTTTCCCTTGGCCTTACCGgtaaaaccac ... tttttggcagAGGAAGATGCTAAGAA-TTCCAAATTCGTTAAGGCGCACAAAAGAGTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatgtttctttttttttatgtaattttaattcactatctcttgttttttggcagAGGAAGATGCTAAGAATTCCAAATTCGTTAAGGCGCACAAAAG
ttttaat putative branch site (score: 3)
ctatctcttgtttttt putative PPT
tttctttttttttatg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaccaccatttccatatctctctctctctttctgatgaattgaattgtatgtttctttttttttatgtaattttaattcactatctcttgttttttggcagAGGAAGATGCTAAGAATTCCAAATTCGTTAAGGCGCACAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG