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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccttttactttcatctattttttagtttttaatttcgatgccttcggttttcgatttctaaccctaattttgcgttggatttggttaatgatctgttttagGCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCTGCGGCGGGGTACCCTGCTCAAGGTGGTCGTGCGGCTTCCATAGAAACTG

Basic information

species Glycine max
transcript GLYMA12G07010.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311449|gb|BG405100.1|BG405100
EST:     GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAG                         GCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT
genomic: GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAGgtacctttta ... tctgttttagGCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT
EST: gi|209713847|gb|BW684040.1|BW684040
EST:     GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAG                         GCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT
genomic: GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAGgtacctttta ... tctgttttagGCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT
EST: gi|213588375|gb|DB967861.1|DB967861
EST:     GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAG                         GCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT
genomic: GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAGgtacctttta ... tctgttttagGCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT
EST: gi|298172444|gb|HO019484.1|HO019484
EST:     GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAG                         GCGCCGGAGGCAACGTGGCAGCACGATTTATTTGCAGATCAGCATGTGGCT
genomic: GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAGgtacctttta ... tctgttttagGCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT
EST: gi|15284976|gb|BI468867.1|BI468867
EST:     GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAG                         GCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT
genomic: GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAGgtacctttta ... tctgttttagGCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT
EST: gi|14126268|gb|BG790706.1|BG790706
EST:     GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCACCGCTAAG                         GCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT
genomic: GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAGgtacctttta ... tctgttttagGCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT
EST: gi|24205347|gb|BU964600.1|BU964600
EST:     GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAG                         GCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT
genomic: GGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAGgtacctttta ... tctgttttagGCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttcgatttctaaccctaattttgcgttggatttggttaatgatctgttttagGCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCTGCGGCGGGGTACCCTGCTCAAGGTGGTCGTGCGGCTTCCATAGAAACTG
                                             tctgtttt  CT-rich tract
                  taatttt  TA-rich tract