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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaattataaatacaactttgcatttaatttactacatatgatatcatattcgtttttatcttcattcatattaaagtgaatcattagATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCACCAGCACGAGACCGATGATCTGACCGGTGCGGTTCATAACCCTGGATCT

Basic information

species Glycine max
transcript GLYMA12G06970.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406176|gb|EV275991.1|EV275991
EST:     TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAG                         ATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCA
genomic: TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAGgttaattata ... gaatcattagATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCA
EST: gi|11689141|gb|BF596817.1|BF596817
EST:     TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAG                         ATGGGCAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCA
genomic: TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAGgttaattata ... gaatcattagATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCA
EST: gi|298169522|gb|HO020882.1|HO020882
EST:     TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAG                         ATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCA
genomic: TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAGgttaattata ... gaatcattagATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCA
EST: gi|298174865|gb|HO014782.1|HO014782
EST:     TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAG                         ATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCA
genomic: TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAGgttaattata ... gaatcattagATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCA
EST: gi|298164154|gb|HO013799.1|HO013799
EST:     TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAG                         ATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCA
genomic: TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAGgttaattata ... gaatcattagATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCA
EST: gi|298198347|gb|HO039886.1|HO039886
EST:     TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAG                         ATGCGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTC
genomic: TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAGgttaattata ... gaatcattagATG-GGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTC
EST: gi|298164038|gb|HO013683.1|HO013683
EST:     TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGCCTCACAG                         ATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCA
genomic: TATGCCAAAGCCTTCGGCTATTCTGTTCGTCGCTTAGACGAGTCTCACAGgttaattata ... gaatcattagATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatatgatatcatattcgtttttatcttcattcatattaaagtgaatcattagATGGGGAGAGTTGGAAACGGGGAACACAACTATTGCTTTCACTCCGATTCACCAGCACGAGACCGATGATCTGACCGGTGCGGTTCATAACCCTGGATCT
                    tttttatcttcattca  TA-rich tract