Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacgcacgcacgccgcctctctctctctctctctctctttattcttctggtttgcttttcccgcaaaaaataagtccctgtttcgcgtggattctccgcgatgttctgattgccctttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCT

Basic information

species Glycine max
transcript GLYMA12G06960.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06960.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 3'ss of exon 1
gtacgtacgcacgcacgccgcctctctctctctctctctctctttattcttctggttt--gcttttcccgcaaaaaataagtccctgtttcgcgtggattctccgcgatgttctgattgccctttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCT
                                            ||    ||   |||    | |   ||  || || |    ||  ||| | | ||||||    |  |  | |  ||    ||   | ||||||||||| ||||||||||| || |||||||| |||||||||||||| || | ||| || || ||||||||||||||||| |||||||| |||||||||||
-------------------------------------------gtaacgatccaattttaaatctcttcgttaagaaca----ccgttttggagcggattcgaaac--ttcttttttttttattcatttgcagATCTTTGTAAAAACCCCGTTGATGGCTTCTCCGCCGGTTTGGTCGACGAGAGCAATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298170658|gb|HO019282.1|HO019282
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|27425977|gb|CA937497.1|CA937497
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|209702411|gb|BW656387.1|BW656387
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|17022209|gb|BM093243.1|BM093243
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|15337487|gb|BI498143.1|BI498143
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|27426740|gb|CA938260.1|CA938260
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|151400067|gb|EV269881.1|EV269881
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|13252164|gb|BG363067.1|BG363067
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|33389826|gb|CA853033.1|CA853033
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298173257|gb|HO020241.1|HO020241
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|151397271|gb|EV267144.1|EV267144
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|33387309|gb|CA850516.1|CA850516
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|14259958|gb|BG882866.1|BG882866
EST:     GCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|19268884|gb|BM885140.1|BM885140
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|208062016|gb|GD856804.1|GD856804
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|20498658|gb|BQ273588.1|BQ273588
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298182923|gb|HO028136.1|HO028136
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAGA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|20498754|gb|BQ273684.1|BQ273684
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|209704114|gb|BW673714.1|BW673714
EST:     CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTTCATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgtacgc ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtccctgtttcgcgtggattctccgcgatgttctgattgccctttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCT
                                ttctgat  putative branch site (score: 3)
                                      ttgccctttcctcgc  CT-rich tract