1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagatgttgcatttgtttagactctgcatgtgaaatactgaaatggctttgttctcaatgaactgagcgattttttatttattttttattttttcagcagTTGAAAATAAAAAATGGCAGATGGTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAA
species | Glycine max |
transcript | GLYMA12G06820.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAGCGGGTAGCTGAGATCGGAGAACCCTCTCTTTCTTCTCCTTCTTCAGCAGEST: gi|120533483|gb|EH261616.1|EH261616
genomic: AGAGCGGGTAGCTGAGATCGGAGAACCCTCTCTTTCTTCTCCTTCTT---CAGgtcactctct ... ttttcagc
EST: AGAGCGGGTAGCTGAGATCGGAGAACCCTCTCTTTCTTCTCCTTCTTCAGCAGEST: gi|209705758|gb|BW661426.1|BW661426
genomic: AGAGCGGGTAGCTGAGATCGGAGAACCCTCTCTTTCTTCTCCTTCTT---CAGgtcactctct ... ttttcagc
EST: AGAGCGGGTAGCTGAGATCGGAGAACCCTCTCTTTCTTCTCCTTCTTCAG TTGAAAATAAAAAATGGCAGATGGTGAGGATATTCAACCACTCGTCTGCGAEST: gi|209699901|gb|BW652541.1|BW652541
genomic: AGAGCGGGTAGCTGAGATCGGAGAACCCTCTCTTTCTTCTCCTTCTTCAGgtcactctct ... ttttcagcagTTGAAAATAAAAAATGGCAGATGGTGAGGATATTCAACCACTCGTCTGCGA
EST: AGAGCGGGTAGCTGAGATCGGAGAACCCTCTCTTTCTTCTCCTTCTTCAGCAGEST: gi|6916053|gb|AW397583.1|AW397583
genomic: AGAGCGGGTAGCTGAGATCGGAGAACCCTCTCTTTCTTCTCCTTCTT---CAGgtcactctct ... ttttcagc
EST: AGAGCGGGTAGCTGAGATCGGAGAACCCTCTCTTTCTTCTCCTTCTTCAGCAG
genomic: AGAGCGGGTAGCTGAGATCGGAGAACCCTCTCTTTCTTCTCCTTCTT---CAGgtcactctct ... ttttcagc
gctttgttctcaatgaactgagcgattttttatttattttttattttttcagcagTTGAAAATAAAAAATGGCAGATGGTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAA
ttttttatttattttt CT-rich tract
aactgagcgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatgttgcatttgtttagactctgcatgtgaaatactgaaatggctttgttctcaatgaactgagcgattttttatttattttttattttttcagcagTTGAAAATAAAAAATGGCAGATGGTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - -tgcattt
- - - - - - - - - - -ctctgca
- - - - - - - - - - - - - - - -gaaatac
- - - - - - - - - - - - - - - - - - - - - - ggctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaac