1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgctttcgtttttcttttcccttcaattcaattcattttcttatataggagatcttaaaggggctaattttgatgctgcttttaattggggtgatagAATTTATTACACGGTGATGGGAGATTGGGAACCCATGTCGGATTGCCACGGACGAATGCGTGTTCTGAAGGAGCCGAAGGGGTATTAGGGTTTGTTAGGG
species | Glycine max |
transcript | GLYMA12G06530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAGA AATTTATTACACGGTGAEST: gi|193392860|gb|FK359649.1|FK359649
genomic: AAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAGAgtatgctttc ... ggggtgatagAATTTATTACACGGTGA
EST: ATTTTTTCAAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAAGAEST: gi|120534289|gb|EH262422.1|EH262422
genomic: ATTTTTTCAAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTA-GA
EST: TGATTTTTTCAAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAGA AATTTATTACACGGTGATGGGAGATTGGGAACCCATGTCGGATTGCCACGGEST: gi|209707156|gb|BW656773.1|BW656773
genomic: TGATTTTTTCAAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAGAgtatgctttc ... ggggtgatagAATTTATTACACGGTGATGGGAGATTGGGAACCCATGTCGGATTGCCACGG
EST: TGATTTTTTCAAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAGA AATTTATTACACGGTGATGGGAGATTGGGAACCCATGTCGGATTGCCACGGEST: gi|193386611|gb|FK352014.1|FK352014
genomic: TGATTTTTTCAAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAGAgtatgctttc ... ggggtgatagAATTTATTACACGGTGATGGGAGATTGGGAACCCATGTCGGATTGCCACGG
EST: TGATTTTTTCAAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAGA AATTTATTACACGGTGAEST: gi|193626829|gb|FK574453.1|FK574453
genomic: TGATTTTTTCAAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAGAgtatgctttc ... ggggtgatagAATTTATTACACGGTGA
EST: TGATTTTTTCAAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAGA AATTTATTACACGGTGATGGGAGATTGGGAACCCATGTCGGATTGCCACGG
genomic: TGATTTTTTCAAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAGAgtatgctttc ... ggggtgatagAATTTATTACACGGTGATGGGAGATTGGGAACCCATGTCGGATTGCCACGG
atataggagatcttaaaggggctaattttgatgctgcttttaattggggtgatagAATTTATTACACGGTGATGGGAGATTGGGAACCCATGTCGGATTGCCACGGACGAATGCGTGTTCTGAAGGAGCCGAAGGGGTATTAGGGTTTGTTAGGG
ttttaat putative branch site (score: 3)
taattttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttcgtttttcttttcccttcaattcaattcattttcttatataggagatcttaaaggggctaattttgatgctgcttttaattggggtgatagAATTTATTACACGGTGATGGGAGATTGGGAACCCATGTCGGATTGCCACGGACGAATGCGTGTTCTGAAGGAGCCGAAGGGGTATTAGGGTTTGTTAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG