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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactttccttttcccacttcacaacaacaaaaaggtgttatttttaatctgaatgctaacttcatttttgtttttgatttctgggtacagATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGTTAAGAGTTGCAACCTCAGGATTTTCACCTGACAA

Basic information

species Glycine max
transcript GLYMA12G06200.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7478144|gb|AW666152.1|AW666152
EST:     CTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATG                         ATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGT
genomic: CTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATGgtgactttcc ... ctgggtacagATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGT
EST: gi|208062154|gb|GD855906.1|GD855906
EST:     CTGGTGGCCTTCCCACCTCAAATCAAACCTTCACAACTTGTCTGATAATG                         ATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGT
genomic: CTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATGgtgactttcc ... ctgggtacagATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGT
EST: gi|193636867|gb|FK582168.1|FK582168
EST:     CTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATG                         ATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGT
genomic: CTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATGgtgactttcc ... ctgggtacagATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatttttaatctgaatgctaacttcatttttgtttttgatttctgggtacagATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGTTAAGAGTTGCAACCTCAGGATTTTCACCTGACAA
                                          tttct  CT-rich tract
                            atttttgtttttgatt  TA-rich tract