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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctcgtatttgtatgtactttctattttggttccctgtgaacttttattttggattgattatgatatggcaataggtgttgcttattctctatctttagGAAAGAAGTGGGTTTTGCGTGTGGCCAGATGCGAGACAACTTTGCTTAAGGAAAGGTCTTCTGTATGGATTTATGCGATTATTTTCAATACCATTAAAAA

Basic information

species Glycine max
transcript GLYMA12G05470.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285766|gb|BI469657.1|BI469657
EST:     TCCTCGTTTGAAGAAGCGAAACGGCATCGCATTCGATGAGTGATGCGAAG                         GAAAGAAGTGGGTTTTGCGTGTGGCCAGATGCGAGACAACTTTGCTTAAGG
genomic: TCCTCGTTTGAAGAAGCGAAACGGCATCGCATTCGATGAGTGATGCGAAGgtagtttaat ... ctatctttagGAAAGAAGTGGGTTTTGCGTGTGGCCAGATGCGAGACAACTTTGCTTAAGG
EST: gi|254348345|gb|GR852024.1|GR852024
EST:     TCCTCGTTTGAAGAAGCGAAACGGCATCGCATTCGATGAGTGATGCGAAG                         GAAAGAAGTGGGTTTTGCGTGTGGCCAGATGCGAGACAACTTTGCTTAAGG
genomic: TCCTCGTTTGAAGAAGCGAAACGGCATCGCATTCGATGAGTGATGCGAAGgtagtttaat ... ctatctttagGAAAGAAGTGGGTTTTGCGTGTGGCCAGATGCGAGACAACTTTGCTTAAGG
EST: gi|151393711|gb|EV263586.1|EV263586
EST:     TCCTCGTTTGAAGAAGCGAAGCGGCATCGCATTCGATGAGTGATGCGAAG                         GAAAGAAGTGGGTTTTGCGTGTGGCCAGATGCGAGACAACTTTGCTTAAGG
genomic: TCCTCGTTTGAAGAAGCGAAACGGCATCGCATTCGATGAGTGATGCGAAGgtagtttaat ... ctatctttagGAAAGAAGTGGGTTTTGCGTGTGGCCAGATGCGAGACAACTTTGCTTAAGG
EST: gi|17401071|gb|BM177853.1|BM177853
EST:     TCCTCGTTTGAAGAAGCGAAACGGCATCGCATTCGATGAGTGATGCGAAG                         GAAAGAAGTGGGTTTTGCGTGTGGCCAGATGCGAGACAACTTTGCTTAAGG
genomic: TCCTCGTTTGAAGAAGCGAAACGGCATCGCATTCGATGAGTGATGCGAAGgtagtttaat ... ctatctttagGAAAGAAGTGGGTTTTGCGTGTGGCCAGATGCGAGACAACTTTGCTTAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttggattgattatgatatggcaataggtgttgcttattctctatctttagGAAAGAAGTGGGTTTTGCGTGTGGCCAGATGCGAGACAACTTTGCTTAAGGAAAGGTCTTCTGTATGGATTTATGCGATTATTTTCAATACCATTAAAAA
        gattgat  putative branch site (score: 4)
                                     cttattctctatcttt  putative PPT
         attgattatgatat  TA-rich tract