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...atgaattaagcaagcctgttgcctagtttttataaattgaaccacgatgatgtgcagctttgcgaggtctttctaatcacaatgtttatgttgtttccagCTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAG
species | Glycine max |
transcript | GLYMA12G04330.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTCCTTCAGTTCAAAGAT CTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAGEST: gi|209705919|gb|BW676024.1|BW676024
genomic: ACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTCCTTCAGTTCAAAGATgtctgtattc ... ttgtttccagCTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAG
EST: ACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTCCTTCAGTTCAAAGAT CTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAGEST: gi|7685600|gb|AW756248.1|AW756248
genomic: ACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTCCTTCAGTTCAAAGATgtctgtattc ... ttgtttccagCTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAG
EST: ACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTCCTTCAGTTCAAAGAT CTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAGEST: gi|213608990|gb|DB962916.1|DB962916
genomic: ACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTCCTTCAGTTCAAAGATgtctgtattc ... ttgtttccagCTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAG
EST: ACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTCCTTCAGTTCAAAGAT CTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAGEST: gi|7685596|gb|AW756244.1|AW756244
genomic: ACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTCCTTCAGTTCAAAGATgtctgtattc ... ttgtttccagCTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAG
EST: ACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTCCTTCAGTTCAAAGAT CTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAGEST: gi|213617324|gb|DB965195.1|DB965195
genomic: ACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTCCTTCAGTTCAAAGATgtctgtattc ... ttgtttccagCTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAG
EST: ACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTCCTTCAGTTCAAAGAT CTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAG
genomic: ACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTCCTTCAGTTCAAAGATgtctgtattc ... ttgtttccagCTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAG
gatgatgtgcagctttgcgaggtctttctaatcacaatgtttatgttgtttccagCTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAG
ttctaat putative branch site (score: 2)
ttgtttcc putative PPT
aatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaattaagcaagcctgttgcctagtttttataaattgaaccacgatgatgtgcagctttgcgaggtctttctaatcacaatgtttatgttgtttccagCTCAATGCAGACAAGAGTCCTTTTCAGCGGACCTATGCAGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - -gcaagcc
- - - - - - - - tgttgcc
- - - - - - - - - - - - - - - - - - - - - - -gatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaca