Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtccctcgcatttcccgttctgcctacaccgttctttccttatgctttcgattccacgtttttcttaattgacctctgtttttttttttttttttgcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG

Basic information

species Glycine max
transcript GLYMA12G04220.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726826|gb|BW672513.1|BW672513
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCATCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagtccct ... ttttttgcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: gi|151410377|gb|EV280192.1|EV280192
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagtccct ... ttttttgcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: gi|15284765|gb|BI468656.1|BI468656
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagtccct ... ttttttgcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcgattccacgtttttcttaattgacctctgtttttttttttttttttgcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
                      aattgac  putative branch site (score: 3)
              tttttcttaattgacc  CT-rich tract
                              tctgtttttttttttt  TA-rich tract